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2OYU
Asym. Unit
Info
Asym.Unit (102 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
INDOMETHACIN-(S)-ALPHA-ETHYL-ETHANOLAMIDE BOUND TO CYCLOOXYGENASE-1
Authors
:
C. A. Harman, R. M. Garavito
Date
:
23 Feb 07 (Deposition) - 24 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : P
Biol. Unit 1: P (2x)
Keywords
:
Cox, Pghs, Indomethacin, Nsaid, Heme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. A. Harman, M. V. Turman, K. R. Kozak, L. J. Marnett, W. L. Smith, R. M. Garavito
Structural Basis Of Enantioselective Inhibition Of Cyclooxygenase-1 By S-Alpha-Substituted Indomethacin Ethanolamides.
J. Biol. Chem. V. 282 28096 2007
[
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Hetero Components
(5, 11)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: B-OCTYLGLUCOSIDE (BOGa)
2b: B-OCTYLGLUCOSIDE (BOGb)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: 2-[1-(4-CHLOROBENZOYL)-5-METHOXY-2... (IMSa)
5a: N-ACETYL-D-GLUCOSAMINE (NAGa)
5b: N-ACETYL-D-GLUCOSAMINE (NAGb)
5c: N-ACETYL-D-GLUCOSAMINE (NAGc)
5d: N-ACETYL-D-GLUCOSAMINE (NAGd)
5e: N-ACETYL-D-GLUCOSAMINE (NAGe)
5f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
BOG
2
Ligand/Ion
B-OCTYLGLUCOSIDE
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
IMS
1
Ligand/Ion
2-[1-(4-CHLOROBENZOYL)-5-METHOXY-2-METHYL-1H-INDOL-3-YL]-N-[(1S)-1-(HYDROXYMETHYL)PROPYL]ACETAMIDE
5
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR P:55 , ASN P:68 , NAG P:662
BINDING SITE FOR RESIDUE NAG P 661
02
AC2
SOFTWARE
TYR P:38 , NAG P:661
BINDING SITE FOR RESIDUE NAG P 662
03
AC3
SOFTWARE
GLU P:140 , ASN P:144 , TYR P:147 , LEU P:238 , NAG P:672 , HOH P:759
BINDING SITE FOR RESIDUE NAG P 671
04
AC4
SOFTWARE
MET P:216 , GLU P:239 , NAG P:671 , BMA P:673 , HOH P:789
BINDING SITE FOR RESIDUE NAG P 672
05
AC5
SOFTWARE
NAG P:672
BINDING SITE FOR RESIDUE BMA P 673
06
AC6
SOFTWARE
GLY P:278 , PRO P:280 , TYR P:402 , GLN P:406 , ASN P:410 , NAG P:682
BINDING SITE FOR RESIDUE NAG P 681
07
AC7
SOFTWARE
TYR P:402 , GLN P:406 , NAG P:681
BINDING SITE FOR RESIDUE NAG P 682
08
AC8
SOFTWARE
SER P:87 , PHE P:88
BINDING SITE FOR RESIDUE BOG P 750
09
AC9
SOFTWARE
PRO P:86 , ILE P:89 , VAL P:119 , ARG P:120 , LEU P:123 , GLU P:524
BINDING SITE FOR RESIDUE BOG P 751
10
BC1
SOFTWARE
HIS P:90 , MET P:113 , VAL P:116 , ARG P:120 , GLN P:192 , VAL P:349 , LEU P:352 , SER P:353 , TYR P:355 , LEU P:359 , TRP P:387 , SER P:516 , PHE P:518 , ILE P:523 , GLY P:526 , ALA P:527 , SER P:530 , LEU P:531
BINDING SITE FOR RESIDUE IMS P 700
11
BC2
SOFTWARE
ALA P:199 , ALA P:202 , GLN P:203 , THR P:206 , HIS P:207 , PHE P:210 , LYS P:211 , THR P:212 , LEU P:295 , ASN P:382 , HIS P:386 , TRP P:387 , HIS P:388 , MET P:391 , VAL P:447 , ASP P:450 , HOH P:763
BINDING SITE FOR RESIDUE HEM P 601
[
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]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_PGH1_SHEEP_001 (R97H, chain P, )
2: VAR_PGH1_SHEEP_002 (G164G, chain P, )
3: VAR_PGH1_SHEEP_003 (R456Q, chain P, )
4: VAR_PGH1_SHEEP_004 (E520K, chain P, )
5: VAR_PGH1_SHEEP_005 (E520Q, chain P, )
6: VAR_PGH1_SHEEP_006 (M525I, chain P, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_PGH1_SHEEP_001
*
R
97
H
PGH1_SHEEP
---
---
P
R
97
H
2
UniProt
VAR_PGH1_SHEEP_002
*
D
164
G
PGH1_SHEEP
---
---
P
G
164
G
3
UniProt
VAR_PGH1_SHEEP_003
*
R
456
Q
PGH1_SHEEP
---
---
P
R
456
Q
4
UniProt
VAR_PGH1_SHEEP_004
*
E
520
K
PGH1_SHEEP
---
---
P
E
520
K
5
UniProt
VAR_PGH1_SHEEP_005
*
E
520
Q
PGH1_SHEEP
---
---
P
E
520
Q
6
UniProt
VAR_PGH1_SHEEP_006
*
M
525
I
PGH1_SHEEP
---
---
P
M
525
I
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: EGF_3 (P:32-70)
2: PEROXIDASE_3 (P:110-584)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
EGF_3
PS50026
EGF-like domain profile.
PGH1_SHEEP
32-70
1
P:32-70
2
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PGH1_SHEEP
110-600
1
P:110-584
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2oyup1 (P:74-584)
2a: SCOP_d2oyup2 (P:32-73)
View:
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Classes
(
)
(
)
Folds
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)
(
)
Superfamilies
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)
(
)
Families
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Heme-dependent peroxidases
(402)
Superfamily
:
Heme-dependent peroxidases
(402)
Family
:
Myeloperoxidase-like
(44)
Protein domain
:
automated matches
(2)
Sheep (Ovis aries) [TaxId: 9940]
(2)
1a
d2oyup1
P:74-584
Class
:
Small proteins
(3458)
Fold
:
Knottins (small inhibitors, toxins, lectins)
(761)
Superfamily
:
EGF/Laminin
(347)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Sheep (Ovis aries) [TaxId: 9940]
(2)
2a
d2oyup2
P:32-73
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2oyuP02 (P:74-583)
2a: CATH_2oyuP01 (P:33-73)
View:
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Classes
(
)
(
)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Myeloperoxidase, subunit C
(39)
Homologous Superfamily
:
Myeloperoxidase, subunit C
(39)
Sheep (Ovis aries)
(18)
1a
2oyuP02
P:74-583
Class
:
Mainly Beta
(13760)
Architecture
:
Ribbon
(789)
Topology
:
Laminin
(270)
Homologous Superfamily
:
Laminin
(263)
Sheep (Ovis aries)
(18)
2a
2oyuP01
P:33-73
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_An_peroxidase_2oyuP01 (P:142-582)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: An_peroxidase]
(45)
Family
:
An_peroxidase
(45)
Ovis aries (Sheep)
(15)
1a
An_peroxidase-2oyuP01
P:142-582
[
close Pfam info
]
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All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain P
Asymmetric Unit 1
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