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2OXE
Biol. Unit 2
Info
Asym.Unit (299 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN PANCREATIC LIPASE-RELATED PROTEIN 2
Authors
:
J. R. Walker, T. Davis, A. Seitova, P. J. Finerty Jr. , C. Butler-Cole, I. Kozieradzki, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwa A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (S
Date
:
20 Feb 07 (Deposition) - 27 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoprotein, Hydrolase, Lipid Degradation, Pancreatic Lipase, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Eydoux, S. Spinelli, T. L. Davis, J. R. Walker, A. Seitova, S. Dhe-Paganon, A. De Caro, C. Cambillau, F. Carriere
Structure Of Human Pancreatic Lipase-Related Protein 2 With The Lid In An Open Conformation.
Biochemistry V. 47 9553 2008
(for further references see the
PDB file header
)
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Hetero Components
(2, 5)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
-1
Ligand/Ion
CALCIUM ION
2
CL
-1
Ligand/Ion
CHLORIDE ION
3
MAN
3
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
2
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
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Sites
(9, 9)
Info
All Sites
1: AC6 (SOFTWARE)
2: AC7 (SOFTWARE)
3: AC8 (SOFTWARE)
4: AC9 (SOFTWARE)
5: BC1 (SOFTWARE)
6: BC3 (SOFTWARE)
7: BC5 (SOFTWARE)
8: BC6 (SOFTWARE)
9: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
ASN B:295 , ASN B:353 , THR B:355 , ASP B:409 , NAG B:501
BINDING SITE FOR RESIDUE NAG B 500
2
AC7
SOFTWARE
ASP B:409 , NAG B:500 , MAN B:502 , HOH B:614
BINDING SITE FOR RESIDUE NAG B 501
3
AC8
SOFTWARE
ASN B:385 , NAG B:501 , MAN B:503 , MAN B:504 , HOH B:630
BINDING SITE FOR RESIDUE MAN B 502
4
AC9
SOFTWARE
MAN B:502 , HOH B:615
BINDING SITE FOR RESIDUE MAN B 503
5
BC1
SOFTWARE
ASN B:383 , ASN B:385 , MAN B:502
BINDING SITE FOR RESIDUE MAN B 504
6
BC3
SOFTWARE
GLU B:206 , ARG B:209 , ASP B:211 , ASP B:214
BINDING SITE FOR RESIDUE CA B 600
7
BC5
SOFTWARE
GLY B:255
BINDING SITE FOR RESIDUE CL B 2
8
BC6
SOFTWARE
LYS A:99 , ARG B:126
BINDING SITE FOR RESIDUE CL A 3
9
BC7
SOFTWARE
PRO B:64 , ASN B:66
BINDING SITE FOR RESIDUE CL B 5
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: LIPASE_SER (B:165-174)
2: PLAT (B:357-469)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
LIPR2_HUMAN
165-174
1
-
B:165-174
2
PLAT
PS50095
PLAT domain profile.
LIPR2_HUMAN
357-469
1
-
B:357-469
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2oxea2 (A:356-469)
1b: SCOP_d2oxeb2 (B:356-469)
2a: SCOP_d2oxea1 (A:18-355)
2b: SCOP_d2oxeb1 (B:18-355)
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Classes
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)
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Folds
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)
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)
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)
(
)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2oxea2
A:356-469
1b
d2oxeb2
B:356-469
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Pancreatic lipase, N-terminal domain
(12)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2oxea1
A:18-355
2b
d2oxeb1
B:18-355
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Lipase_2oxeB01 (B:18-354)
1b: PFAM_Lipase_2oxeB02 (B:18-354)
2a: PFAM_PLAT_2oxeB03 (B:359-467)
2b: PFAM_PLAT_2oxeB04 (B:359-467)
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Clans
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)
(
)
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)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Lipase
(7)
Homo sapiens (Human)
(6)
1a
Lipase-2oxeB01
B:18-354
1b
Lipase-2oxeB02
B:18-354
Clan
:
PLAT
(25)
Family
:
PLAT
(25)
Homo sapiens (Human)
(7)
2a
PLAT-2oxeB03
B:359-467
2b
PLAT-2oxeB04
B:359-467
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Protein & NOT Site
Protein & NOT PROSITE
Chain B
Asymmetric Unit 1
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Asym.Unit (299 KB)
Header - Asym.Unit
Biol.Unit 1 (147 KB)
Header - Biol.Unit 1
Biol.Unit 2 (146 KB)
Header - Biol.Unit 2
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