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2OXE
Asym. Unit
Info
Asym.Unit (299 KB)
Biol.Unit 1 (147 KB)
Biol.Unit 2 (146 KB)
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(1)
Title
:
STRUCTURE OF THE HUMAN PANCREATIC LIPASE-RELATED PROTEIN 2
Authors
:
J. R. Walker, T. Davis, A. Seitova, P. J. Finerty Jr. , C. Butler-Cole, I. Kozieradzki, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwa A. Bochkarev, S. Dhe-Paganon, Structural Genomics Consortium (S
Date
:
20 Feb 07 (Deposition) - 27 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Glycoprotein, Hydrolase, Lipid Degradation, Pancreatic Lipase, Structural Genomics Consortium, Sgc
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Eydoux, S. Spinelli, T. L. Davis, J. R. Walker, A. Seitova, S. Dhe-Paganon, A. De Caro, C. Cambillau, F. Carriere
Structure Of Human Pancreatic Lipase-Related Protein 2 With The Lid In An Open Conformation.
Biochemistry V. 47 9553 2008
(for further references see the
PDB file header
)
[
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]
Hetero Components
(4, 17)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
2a: CHLORIDE ION (CLa)
2b: CHLORIDE ION (CLb)
2c: CHLORIDE ION (CLc)
2d: CHLORIDE ION (CLd)
2e: CHLORIDE ION (CLe)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
2
Ligand/Ion
CALCIUM ION
2
CL
5
Ligand/Ion
CHLORIDE ION
3
MAN
6
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
4
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:353 , THR A:355 , PHE A:410 , NAG A:501 , HOH A:624
BINDING SITE FOR RESIDUE NAG A 500
02
AC2
SOFTWARE
GLU A:384 , ASN A:385 , ASP A:409 , PHE A:410 , NAG A:500 , MAN A:502
BINDING SITE FOR RESIDUE NAG A 501
03
AC3
SOFTWARE
ASN A:385 , NAG A:501 , MAN A:503 , MAN A:504
BINDING SITE FOR RESIDUE MAN A 502
04
AC4
SOFTWARE
MAN A:502
BINDING SITE FOR RESIDUE MAN A 503
05
AC5
SOFTWARE
ASN A:385 , MAN A:502
BINDING SITE FOR RESIDUE MAN A 504
06
AC6
SOFTWARE
ASN B:295 , ASN B:353 , THR B:355 , ASP B:409 , NAG B:501
BINDING SITE FOR RESIDUE NAG B 500
07
AC7
SOFTWARE
ASP B:409 , NAG B:500 , MAN B:502 , HOH B:614
BINDING SITE FOR RESIDUE NAG B 501
08
AC8
SOFTWARE
ASN B:385 , NAG B:501 , MAN B:503 , MAN B:504 , HOH B:630
BINDING SITE FOR RESIDUE MAN B 502
09
AC9
SOFTWARE
MAN B:502 , HOH B:615
BINDING SITE FOR RESIDUE MAN B 503
10
BC1
SOFTWARE
ASN B:383 , ASN B:385 , MAN B:502
BINDING SITE FOR RESIDUE MAN B 504
11
BC2
SOFTWARE
GLU A:206 , ARG A:209 , ASP A:211 , ASP A:214 , HOH A:617
BINDING SITE FOR RESIDUE CA A 600
12
BC3
SOFTWARE
GLU B:206 , ARG B:209 , ASP B:211 , ASP B:214
BINDING SITE FOR RESIDUE CA B 600
13
BC4
SOFTWARE
ASN A:66
BINDING SITE FOR RESIDUE CL A 1
14
BC5
SOFTWARE
GLY B:255
BINDING SITE FOR RESIDUE CL B 2
15
BC6
SOFTWARE
LYS A:99 , ARG B:126
BINDING SITE FOR RESIDUE CL A 3
16
BC7
SOFTWARE
PRO B:64 , ASN B:66
BINDING SITE FOR RESIDUE CL B 5
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: LIPASE_SER (A:165-174,B:165-174)
2: PLAT (A:357-469,B:357-469)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
LIPR2_HUMAN
165-174
2
A:165-174
B:165-174
2
PLAT
PS50095
PLAT domain profile.
LIPR2_HUMAN
357-469
2
A:357-469
B:357-469
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2oxea2 (A:356-469)
1b: SCOP_d2oxeb2 (B:356-469)
2a: SCOP_d2oxea1 (A:18-355)
2b: SCOP_d2oxeb1 (B:18-355)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Superfamily
:
Lipase/lipooxygenase domain (PLAT/LH2 domain)
(47)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2oxea2
A:356-469
1b
d2oxeb2
B:356-469
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
Pancreatic lipase, N-terminal domain
(12)
Protein domain
:
automated matches
(4)
Human (Homo sapiens) [TaxId: 9606]
(3)
2a
d2oxea1
A:18-355
2b
d2oxeb1
B:18-355
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Lipase_2oxeB01 (B:18-354)
1b: PFAM_Lipase_2oxeB02 (B:18-354)
2a: PFAM_PLAT_2oxeB03 (B:359-467)
2b: PFAM_PLAT_2oxeB04 (B:359-467)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Lipase
(7)
Homo sapiens (Human)
(6)
1a
Lipase-2oxeB01
B:18-354
1b
Lipase-2oxeB02
B:18-354
Clan
:
PLAT
(25)
Family
:
PLAT
(25)
Homo sapiens (Human)
(7)
2a
PLAT-2oxeB03
B:359-467
2b
PLAT-2oxeB04
B:359-467
[
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]
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Nucleic
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
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Asymmetric Unit 1
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select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (299 KB)
Header - Asym.Unit
Biol.Unit 1 (147 KB)
Header - Biol.Unit 1
Biol.Unit 2 (146 KB)
Header - Biol.Unit 2
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