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2OX4
Asym. Unit
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Asym.Unit (579 KB)
Biol.Unit 1 (570 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PUTATIVE DEHYDRATASE FROM ZYMOMONAS MOBILIS ZM4
Authors
:
Y. Patskovsky, R. Toro, J. M. Sauder, J. C. Freeman, K. Bain, T. Gheyi, S. R. Wasserman, D. Smith, J. Gerlt, S. K. Burley, S. C. Almo, New York Research Center For Structural Genomics (Nysgxrc)
Date
:
19 Feb 07 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Enolase, Dehydratase, Structural Genomics, Protein Structure Initiative, Psi, Nysgrc, New York Structural Genomics Research Consortium, New York Sgx Research Center For Structural Genomics, Nysgxrc, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Patskovsky, R. Toro, J. M. Sauder, J. C. Freeman, K. Bain, T. Gheyi, S. R. Wasserman, D. Smith, J. Gerlt, S. K. Burley, S. C. Almo
Crystal Structure Of Putative Dehydratase From Zymomonas Mobilis Zm4
To Be Published
[
close entry info
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Hetero Components
(3, 26)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
2n: GLYCEROL (GOLn)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
4
Ligand/Ion
CHLORIDE ION
2
GOL
14
Ligand/Ion
GLYCEROL
3
MG
8
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
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Sites
(26, 26)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU A:213 , GLU A:239 , GLU A:265 , HOH A:3470 , HOH A:3504 , HOH A:3575
BINDING SITE FOR RESIDUE MG A 402
02
AC2
SOFTWARE
GLY A:86 , THR A:87 , VAL A:88 , ILE A:89 , GLY B:86 , THR B:87 , VAL B:88 , ILE B:89
BINDING SITE FOR RESIDUE CL B 501
03
AC3
SOFTWARE
GLU B:213 , GLU B:239 , GLU B:265 , HOH B:3509 , HOH B:3594 , HOH B:3766
BINDING SITE FOR RESIDUE MG B 502
04
AC4
SOFTWARE
GLU C:213 , GLU C:239 , GLU C:265 , HOH C:3447 , HOH C:3506 , HOH C:3576
BINDING SITE FOR RESIDUE MG C 402
05
AC5
SOFTWARE
GLU D:213 , GLU D:239 , GLU D:265 , HOH D:3519 , HOH D:3550 , HOH D:3564
BINDING SITE FOR RESIDUE MG D 402
06
AC6
SOFTWARE
GLY D:86 , THR D:87 , VAL D:88 , ILE D:89 , GLY E:86 , THR E:87 , VAL E:88 , ILE E:89
BINDING SITE FOR RESIDUE CL D 501
07
AC7
SOFTWARE
GLU E:213 , GLU E:239 , GLU E:265 , HOH E:3453 , HOH E:3534 , HOH E:3574
BINDING SITE FOR RESIDUE MG E 402
08
AC8
SOFTWARE
GLU F:213 , GLU F:239 , GLU F:265 , HOH F:3486 , HOH F:3534 , HOH F:3536
BINDING SITE FOR RESIDUE MG F 402
09
AC9
SOFTWARE
GLY F:86 , THR F:87 , VAL F:88 , ILE F:89 , GLY H:86 , THR H:87 , VAL H:88 , ILE H:89
BINDING SITE FOR RESIDUE CL F 501
10
BC1
SOFTWARE
GLY C:86 , THR C:87 , VAL C:88 , ILE C:89 , GLY G:86 , THR G:87 , VAL G:88 , ILE G:89
BINDING SITE FOR RESIDUE CL G 501
11
BC2
SOFTWARE
GLU G:213 , GLU G:239 , GLU G:265 , HOH G:3525 , HOH G:3539 , HOH G:3586
BINDING SITE FOR RESIDUE MG G 502
12
BC3
SOFTWARE
GLU H:213 , GLU H:239 , GLU H:265 , HOH H:3494 , HOH H:3520 , HOH H:3593
BINDING SITE FOR RESIDUE MG H 402
13
BC4
SOFTWARE
HIS A:10 , ARG A:20 , GLY A:43 , VAL A:44 , GLY A:45 , GLY A:46 , HOH A:3473 , HOH A:3733 , HOH A:3736 , ASP B:55 , HOH B:3504
BINDING SITE FOR RESIDUE GOL A 3401
14
BC5
SOFTWARE
TRP A:101 , LEU A:115 , LEU A:116 , GLY A:117 , LYS A:299 , TRP H:101 , LEU H:115 , LEU H:116 , GLY H:117 , LYS H:299 , HOH H:3578
BINDING SITE FOR RESIDUE GOL A 3414
15
BC6
SOFTWARE
ASP A:55 , HOH A:3502 , HIS B:10 , ARG B:20 , GLY B:43 , VAL B:44 , GLY B:45 , GLY B:46 , HOH B:3510 , HOH B:3760 , HOH B:3796
BINDING SITE FOR RESIDUE GOL B 3402
16
BC7
SOFTWARE
TRP B:101 , LEU B:115 , LEU B:116 , HOH B:3670 , TRP C:101 , LEU C:115 , LEU C:116 , GLY C:117 , LYS C:299 , HOH C:3633 , HOH C:3783
BINDING SITE FOR RESIDUE GOL C 3403
17
BC8
SOFTWARE
HIS C:10 , ARG C:20 , GLY C:43 , VAL C:44 , GLY C:45 , GLY C:46 , HOH C:3454 , HOH C:3599 , HOH C:3785 , ASP G:55 , HOH G:3497
BINDING SITE FOR RESIDUE GOL C 3404
18
BC9
SOFTWARE
HIS D:10 , ARG D:20 , GLY D:43 , VAL D:44 , GLY D:45 , GLY D:46 , HOH D:3499 , HOH D:3655 , HOH D:3746 , ASP E:55 , HOH E:3565
BINDING SITE FOR RESIDUE GOL D 3406
19
CC1
SOFTWARE
GLN D:19 , TYR D:42 , ARG D:139 , ALA D:317 , HIS D:342 , LYS D:344 , HOH D:3616
BINDING SITE FOR RESIDUE GOL D 3413
20
CC2
SOFTWARE
ASP D:55 , HOH D:3488 , HIS E:10 , ARG E:20 , GLY E:43 , VAL E:44 , GLY E:45 , GLY E:46 , HOH E:3558 , HOH E:3642
BINDING SITE FOR RESIDUE GOL E 3407
21
CC3
SOFTWARE
HIS F:10 , ARG F:20 , GLY F:43 , VAL F:44 , GLY F:45 , GLY F:46 , HOH F:3471 , HOH F:3523 , HOH F:3800 , ASP H:55
BINDING SITE FOR RESIDUE GOL F 3409
22
CC4
SOFTWARE
LYS F:25 , TYR F:33 , ASP F:376 , ILE F:377 , GLU F:379 , TYR F:382 , HOH F:3684
BINDING SITE FOR RESIDUE GOL F 3411
23
CC5
SOFTWARE
ASP C:55 , HOH C:3571 , HIS G:10 , ARG G:20 , GLY G:43 , VAL G:44 , GLY G:45 , GLY G:46 , HOH G:3551 , HOH G:3585
BINDING SITE FOR RESIDUE GOL G 3405
24
CC6
SOFTWARE
LYS D:114 , SER G:0 , LEU G:1 , ASP G:64 , PHE G:66 , HOH G:3747
BINDING SITE FOR RESIDUE GOL G 3408
25
CC7
SOFTWARE
GLY G:178 , VAL G:179 , PHE G:180 , PRO G:186 , THR G:189 , HOH G:3564 , HOH G:3615 , HOH G:3637
BINDING SITE FOR RESIDUE GOL G 3412
26
CC8
SOFTWARE
ASP F:55 , HOH F:3487 , HIS H:10 , ARG H:20 , GLY H:43 , VAL H:44 , GLY H:45 , GLY H:46 , HOH H:3533 , HOH H:3701 , HOH H:3704
BINDING SITE FOR RESIDUE GOL H 3410
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2ox4a1 (A:0-118)
1b: SCOP_d2ox4b1 (B:0-118)
1c: SCOP_d2ox4c1 (C:0-118)
1d: SCOP_d2ox4d1 (D:0-118)
1e: SCOP_d2ox4e1 (E:0-118)
1f: SCOP_d2ox4f1 (F:0-118)
1g: SCOP_d2ox4g1 (G:0-118)
1h: SCOP_d2ox4h1 (H:0-118)
2a: SCOP_d2ox4a2 (A:119-392)
2b: SCOP_d2ox4b2 (B:119-392)
2c: SCOP_d2ox4c2 (C:119-398)
2d: SCOP_d2ox4d2 (D:119-398)
2e: SCOP_d2ox4e2 (E:119-392)
2f: SCOP_d2ox4f2 (F:119-392)
2g: SCOP_d2ox4g2 (G:119-392)
2h: SCOP_d2ox4h2 (H:119-392)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Zymomonas mobilis [TaxId: 542]
(1)
1a
d2ox4a1
A:0-118
1b
d2ox4b1
B:0-118
1c
d2ox4c1
C:0-118
1d
d2ox4d1
D:0-118
1e
d2ox4e1
E:0-118
1f
d2ox4f1
F:0-118
1g
d2ox4g1
G:0-118
1h
d2ox4h1
H:0-118
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Zymomonas mobilis [TaxId: 542]
(1)
2a
d2ox4a2
A:119-392
2b
d2ox4b2
B:119-392
2c
d2ox4c2
C:119-398
2d
d2ox4d2
D:119-398
2e
d2ox4e2
E:119-392
2f
d2ox4f2
F:119-392
2g
d2ox4g2
G:119-392
2h
d2ox4h2
H:119-392
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_MR_MLE_N_2ox4H01 (H:4-117)
1b: PFAM_MR_MLE_N_2ox4H02 (H:4-117)
1c: PFAM_MR_MLE_N_2ox4H03 (H:4-117)
1d: PFAM_MR_MLE_N_2ox4H04 (H:4-117)
1e: PFAM_MR_MLE_N_2ox4H05 (H:4-117)
1f: PFAM_MR_MLE_N_2ox4H06 (H:4-117)
1g: PFAM_MR_MLE_N_2ox4H07 (H:4-117)
1h: PFAM_MR_MLE_N_2ox4H08 (H:4-117)
2a: PFAM_MR_MLE_C_2ox4H09 (H:264-376)
2b: PFAM_MR_MLE_C_2ox4H10 (H:264-376)
2c: PFAM_MR_MLE_C_2ox4H11 (H:264-376)
2d: PFAM_MR_MLE_C_2ox4H12 (H:264-376)
2e: PFAM_MR_MLE_C_2ox4H13 (H:264-376)
2f: PFAM_MR_MLE_C_2ox4H14 (H:264-376)
2g: PFAM_MR_MLE_C_2ox4H15 (H:264-376)
2h: PFAM_MR_MLE_C_2ox4H16 (H:264-376)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Enolase_N
(69)
Family
:
MR_MLE_N
(47)
Zymomonas mobilis
(1)
1a
MR_MLE_N-2ox4H01
H:4-117
1b
MR_MLE_N-2ox4H02
H:4-117
1c
MR_MLE_N-2ox4H03
H:4-117
1d
MR_MLE_N-2ox4H04
H:4-117
1e
MR_MLE_N-2ox4H05
H:4-117
1f
MR_MLE_N-2ox4H06
H:4-117
1g
MR_MLE_N-2ox4H07
H:4-117
1h
MR_MLE_N-2ox4H08
H:4-117
Clan
:
Enolase_TIM
(82)
Family
:
MR_MLE_C
(29)
Zymomonas mobilis
(1)
2a
MR_MLE_C-2ox4H09
H:264-376
2b
MR_MLE_C-2ox4H10
H:264-376
2c
MR_MLE_C-2ox4H11
H:264-376
2d
MR_MLE_C-2ox4H12
H:264-376
2e
MR_MLE_C-2ox4H13
H:264-376
2f
MR_MLE_C-2ox4H14
H:264-376
2g
MR_MLE_C-2ox4H15
H:264-376
2h
MR_MLE_C-2ox4H16
H:264-376
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