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2OW2
Biol. Unit 2
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Asym.Unit (62 KB)
Biol.Unit 1 (30 KB)
Biol.Unit 2 (29 KB)
Biol.Unit 3 (109 KB)
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(1)
Title
:
MMP-9 ACTIVE SITE MUTANT WITH DIFLUORO BUTANOIC ACID INHIBITOR
Authors
:
A. Tochowicz, W. Bode, K. Maskos, P. Goettig
Date
:
15 Feb 07 (Deposition) - 19 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Matrix Metalloproteinase, S1-Prime Pocket, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
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Reference
:
A. Tochowicz, K. Maskos, R. Huber, R. Oltenfreiter, V. Dive, A. Yiotakis, M. Zanda, W. Bode, P. Goettig
Crystal Structures Of Mmp-9 Complexes With Five Inhibitors: Contribution Of The Flexible Arg424 Side-Chain To Selectivity.
J. Mol. Biol. V. 371 989 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (3R)-4,4-DIFLUORO-3-[(4-METHOXYPHE... (8MRa)
1b: (3R)-4,4-DIFLUORO-3-[(4-METHOXYPHE... (8MRb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
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Label:
No.
Name
Count
Type
Full Name
1
8MR
1
Ligand/Ion
(3R)-4,4-DIFLUORO-3-[(4-METHOXYPHENYL)SULFONYL]BUTANOICACID
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(8, 8)
Info
All Sites
1: AC3 (SOFTWARE)
2: AC4 (SOFTWARE)
3: AC7 (SOFTWARE)
4: AC8 (SOFTWARE)
5: AC9 (SOFTWARE)
6: BC1 (SOFTWARE)
7: BC3 (SOFTWARE)
8: BC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC3
SOFTWARE
HIS B:401 , HIS B:405 , HIS B:411 , 8MR B:502
BINDING SITE FOR RESIDUE ZN B 444
2
AC4
SOFTWARE
HIS B:175 , ASP B:177 , HIS B:190 , HIS B:203
BINDING SITE FOR RESIDUE ZN B 445
3
AC7
SOFTWARE
ASP B:182 , GLY B:183 , ASP B:185 , LEU B:187 , ASP B:205 , GLU B:208
BINDING SITE FOR RESIDUE CA B 446
4
AC8
SOFTWARE
LEU A:212 , SER B:211 , LEU B:212 , GLY B:213 , LYS B:214 , GLY B:215 , GLN B:391 , HOH B:534
BINDING SITE FOR RESIDUE CA B 447
5
AC9
SOFTWARE
SER A:211 , LEU A:212 , LYS A:214 , GLY A:215 , GLN A:391 , HOH A:503 , HOH A:567 , LEU B:212
BINDING SITE FOR RESIDUE CA A 448
6
BC1
SOFTWARE
ASP B:131 , ASP B:206 , GLU B:208
BINDING SITE FOR RESIDUE CA B 448
7
BC3
SOFTWARE
ASN A:127 , TYR A:128 , ASN B:127 , TYR B:128
BINDING SITE FOR RESIDUE CL A 450
8
BC5
SOFTWARE
LEU B:187 , LEU B:188 , ALA B:189 , HIS B:401 , GLN B:402 , HIS B:405 , HIS B:411 , PRO B:421 , MET B:422 , TYR B:423 , ZN B:444 , HOH B:547
BINDING SITE FOR RESIDUE 8MR B 502
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020054 (N127K, chain B, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020054
N
127
K
MMP9_HUMAN
Polymorphism
3918252
B
N
127
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (B:398-407)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP9_HUMAN
398-407
1
-
B:398-407
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ow2a_ (A:)
1b: SCOP_d2ow2b_ (B:)
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Protein Domains
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(
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Organisms
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)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Gelatinase B (MMP-9)
(13)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d2ow2a_
A:
1b
d2ow2b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ow2A00 (A:113-443)
1b: CATH_2ow2B00 (B:114-443)
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Organisms
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
2ow2A00
A:113-443
1b
2ow2B00
B:114-443
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Pfam Domains
(0, 0)
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Chain B
Asymmetric Unit 1
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Asym.Unit (62 KB)
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Header - Biol.Unit 1
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Biol.Unit 3 (109 KB)
Header - Biol.Unit 3
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