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2OW1
Biol. Unit 1
Info
Asym.Unit (65 KB)
Biol.Unit 1 (31 KB)
Biol.Unit 2 (30 KB)
Biol.Unit 3 (114 KB)
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(1)
Title
:
MMP-9 ACTIVE SITE MUTANT WITH TRIFLUOROMETHYL HYDROXAMATE INHIBITOR
Authors
:
A. Tochowicz, W. Bode, K. Maskos, P. Goettig
Date
:
15 Feb 07 (Deposition) - 19 Jun 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (2x)
Keywords
:
Matrix Metalloproteinase, S1-Prime Pocket, Hydrolase-Hydrolase Inhibitor Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
A. Tochowicz, K. Maskos, R. Huber, R. Oltenfreiter, V. Dive, A. Yiotakis, M. Zanda, W. Bode, P. Goettig
Crystal Structures Of Mmp-9 Complexes With Five Inhibitors: Contribution Of The Flexible Arg424 Side-Chain To Selectivity.
J. Mol. Biol. V. 371 989 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: (2R)-2-AMINO-3,3,3-TRIFLUORO-N-HYD... (7MRa)
1b: (2R)-2-AMINO-3,3,3-TRIFLUORO-N-HYD... (7MRb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
2e: CALCIUM ION (CAe)
2f: CALCIUM ION (CAf)
2g: CALCIUM ION (CAg)
2h: CALCIUM ION (CAh)
3a: CHLORIDE ION (CLa)
3b: CHLORIDE ION (CLb)
3c: CHLORIDE ION (CLc)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
7MR
1
Ligand/Ion
(2R)-2-AMINO-3,3,3-TRIFLUORO-N-HYDROXY-2-{[(4-PHENOXYPHENYL)SULFONYL]METHYL}PROPANAMIDE
2
CA
-1
Ligand/Ion
CALCIUM ION
3
CL
-1
Ligand/Ion
CHLORIDE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC6 (SOFTWARE)
05: AC7 (SOFTWARE)
06: AC8 (SOFTWARE)
07: BC4 (SOFTWARE)
08: BC5 (SOFTWARE)
09: BC6 (SOFTWARE)
10: BC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:401 , HIS A:405 , HIS A:411 , 7MR A:501
BINDING SITE FOR RESIDUE ZN A 444
02
AC2
SOFTWARE
HIS A:175 , ASP A:177 , HIS A:190 , HIS A:203
BINDING SITE FOR RESIDUE ZN A 445
03
AC5
SOFTWARE
ASP A:182 , GLY A:183 , ASP A:185 , LEU A:187 , ASP A:205 , GLU A:208
BINDING SITE FOR RESIDUE CA A 446
04
AC6
SOFTWARE
ASP A:165 , GLY A:197 , GLN A:199 , ASP A:201 , HOH A:505 , HOH A:594
BINDING SITE FOR RESIDUE CA A 447
05
AC7
SOFTWARE
SER A:129 , ASP A:131 , ASP A:206 , GLU A:208
BINDING SITE FOR RESIDUE CA A 448
06
AC8
SOFTWARE
SER A:149 , THR A:152 , HOH A:532 , HOH A:576
BINDING SITE FOR RESIDUE CA A 449
07
BC4
SOFTWARE
ASN A:127 , TYR A:128 , TYR B:128
BINDING SITE FOR RESIDUE CL A 450
08
BC5
SOFTWARE
ASN A:127 , GLN A:169 , PHE A:170 , HOH A:543
BINDING SITE FOR RESIDUE CL A 451
09
BC6
SOFTWARE
GLY A:213 , SER A:394 , HOH B:509
BINDING SITE FOR RESIDUE CL A 452
10
BC7
SOFTWARE
GLY A:186 , LEU A:188 , ALA A:189 , HIS A:401 , GLN A:402 , HIS A:405 , HIS A:411 , LEU A:418 , TYR A:420 , PRO A:421 , MET A:422 , TYR A:423 , ARG A:424 , ZN A:444 , HOH A:551
BINDING SITE FOR RESIDUE 7MR A 501
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_020054 (N127K, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_020054
N
127
K
MMP9_HUMAN
Polymorphism
3918252
A
N
127
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (A:398-407)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
MMP9_HUMAN
398-407
1
A:398-407
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ow1a_ (A:)
1b: SCOP_d2ow1b_ (B:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Matrix metalloproteases, catalytic domain
(199)
Protein domain
:
Gelatinase B (MMP-9)
(13)
Human (Homo sapiens) [TaxId: 9606]
(13)
1a
d2ow1a_
A:
1b
d2ow1b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ow1A00 (A:110-443)
1b: CATH_2ow1B00 (B:114-443)
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Collagenase (Catalytic Domain)
(236)
Homologous Superfamily
:
Collagenase (Catalytic Domain)
(234)
Human (Homo sapiens)
(153)
1a
2ow1A00
A:110-443
1b
2ow1B00
B:114-443
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Peptidase_M10_2ow1B01 (B:115-443)
1b: PFAM_Peptidase_M10_2ow1B02 (B:115-443)
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Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M10
(85)
Homo sapiens (Human)
(82)
1a
Peptidase_M10-2ow1B01
B:115-443
1b
Peptidase_M10-2ow1B02
B:115-443
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Chain A
Asymmetric Unit 1
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Asym.Unit (65 KB)
Header - Asym.Unit
Biol.Unit 1 (31 KB)
Header - Biol.Unit 1
Biol.Unit 2 (30 KB)
Header - Biol.Unit 2
Biol.Unit 3 (114 KB)
Header - Biol.Unit 3
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