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2OVL
Asym. Unit
Info
Asym.Unit (235 KB)
Biol.Unit 1 (118 KB)
Biol.Unit 2 (114 KB)
Biol.Unit 3 (455 KB)
Biol.Unit 4 (439 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A RACEMASE FROM STREPTOMYCES COELICOLOR A3(2)
Authors
:
K. N. Rao, S. K. Burley, S. Swaminathan, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
14 Feb 07 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.13
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: A,B (4x)
Biol. Unit 4: C,D (4x)
Keywords
:
Crystal Structure, Racemase, Streptomyces Coelicolor A3(2), 9301A, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Isomerase
(Keyword Search:
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Reference
:
K. N. Rao, S. K. Burley, S. Swaminathan
Crystal Structure Of A Racemase From Streptomyces Coelicolor A3(2)
To Be Published
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 45)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: SODIUM ION (NAa)
2b: SODIUM ION (NAb)
2c: SODIUM ION (NAc)
2d: SODIUM ION (NAd)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
41
Mod. Amino Acid
SELENOMETHIONINE
2
NA
4
Ligand/Ion
SODIUM ION
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ASP A:197 , ASN A:199 , GLU A:223 , GLU A:224 , GLU A:249
BINDING SITE FOR RESIDUE NA A 400
2
AC2
SOFTWARE
ASP B:197 , ASN B:199 , GLU B:223 , GLU B:224 , GLU B:249
BINDING SITE FOR RESIDUE NA B 400
3
AC3
SOFTWARE
LYS C:166 , ASP C:197 , GLU C:223 , GLU C:249 , HIS C:299 , GLU C:319
BINDING SITE FOR RESIDUE NA C 400
4
AC4
SOFTWARE
ASP D:197 , ASN D:199 , GLU D:223 , GLU D:224 , GLU D:249
BINDING SITE FOR RESIDUE NA D 400
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2ovla1 (A:3-129)
1b: SCOP_d2ovlb1 (B:3-129)
1c: SCOP_d2ovlc1 (C:3-129)
1d: SCOP_d2ovld1 (D:3-129)
2a: SCOP_d2ovla2 (A:130-362)
2b: SCOP_d2ovlb2 (B:130-362)
2c: SCOP_d2ovlc2 (C:130-362)
2d: SCOP_d2ovld2 (D:130-360)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Streptomyces coelicolor [TaxId: 100226]
(3)
1a
d2ovla1
A:3-129
1b
d2ovlb1
B:3-129
1c
d2ovlc1
C:3-129
1d
d2ovld1
D:3-129
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Streptomyces coelicolor [TaxId: 100226]
(3)
2a
d2ovla2
A:130-362
2b
d2ovlb2
B:130-362
2c
d2ovlc2
C:130-362
2d
d2ovld2
D:130-360
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2ovlA01 (A:3-120,A:354-362)
1b: CATH_2ovlD01 (D:3-120,D:354-360)
1c: CATH_2ovlB01 (B:3-120,B:354-362)
1d: CATH_2ovlC01 (C:3-120,C:354-362)
2a: CATH_2ovlA02 (A:121-353)
2b: CATH_2ovlB02 (B:121-353)
2c: CATH_2ovlC02 (C:121-353)
2d: CATH_2ovlD02 (D:121-353)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Streptomyces coelicolor a3(2). Organism_taxid: 100226. Strain: a3(2),m145.
(3)
1a
2ovlA01
A:3-120,A:354-362
1b
2ovlD01
D:3-120,D:354-360
1c
2ovlB01
B:3-120,B:354-362
1d
2ovlC01
C:3-120,C:354-362
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Streptomyces coelicolor a3(2). Organism_taxid: 100226. Strain: a3(2),m145.
(3)
2a
2ovlA02
A:121-353
2b
2ovlB02
B:121-353
2c
2ovlC02
C:121-353
2d
2ovlD02
D:121-353
[
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_MR_MLE_N_2ovlD01 (D:6-128)
1b: PFAM_MR_MLE_N_2ovlD02 (D:6-128)
1c: PFAM_MR_MLE_N_2ovlD03 (D:6-128)
1d: PFAM_MR_MLE_N_2ovlD04 (D:6-128)
2a: PFAM_MR_MLE_2ovlD05 (D:180-248)
2b: PFAM_MR_MLE_2ovlD06 (D:180-248)
2c: PFAM_MR_MLE_2ovlD07 (D:180-248)
2d: PFAM_MR_MLE_2ovlD08 (D:180-248)
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Organisms
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Clan
:
Enolase_N
(69)
Family
:
MR_MLE_N
(47)
Streptomyces coelicolor
(2)
1a
MR_MLE_N-2ovlD01
D:6-128
1b
MR_MLE_N-2ovlD02
D:6-128
1c
MR_MLE_N-2ovlD03
D:6-128
1d
MR_MLE_N-2ovlD04
D:6-128
Clan
:
Enolase_TIM
(82)
Family
:
MR_MLE
(48)
Streptomyces coelicolor
(2)
2a
MR_MLE-2ovlD05
D:180-248
2b
MR_MLE-2ovlD06
D:180-248
2c
MR_MLE-2ovlD07
D:180-248
2d
MR_MLE-2ovlD08
D:180-248
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