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2OV2
Biol. Unit 4
Info
Asym.Unit (302 KB)
Biol.Unit 1 (42 KB)
Biol.Unit 10 (79 KB)
Biol.Unit 11 (77 KB)
Biol.Unit 12 (77 KB)
Biol.Unit 2 (43 KB)
Biol.Unit 3 (42 KB)
Biol.Unit 4 (42 KB)
Biol.Unit 5 (41 KB)
Biol.Unit 6 (42 KB)
Biol.Unit 7 (42 KB)
Biol.Unit 8 (41 KB)
Biol.Unit 9 (76 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF THE HUMAN RAC3 IN COMPLEX WITH THE CRIB DOMAIN OF HUMAN P21-ACTIVATED KINASE 4 (PAK4)
Authors
:
E. Ugochukwu, X. Yang, J. M. Elkins, N. Burgess-Brown, G. Bunkoczi, J. E. D. Debreczeni, M. Sundstrom, C. H. Arrowsmith, J. Weigelt, A. Edw F. Von Delft, S. Knapp, D. A. Doyle, Structural Genomics Consortiu
Date
:
12 Feb 07 (Deposition) - 13 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P
Biol. Unit 1: A,I (1x)
Biol. Unit 2: B,J (1x)
Biol. Unit 3: C,K (1x)
Biol. Unit 4: D,L (1x)
Biol. Unit 5: E,M (1x)
Biol. Unit 6: F,N (1x)
Biol. Unit 7: G,O (1x)
Biol. Unit 8: H,P (1x)
Biol. Unit 9: E,H,M,P (1x)
Biol. Unit 10: A,B,I,J (1x)
Biol. Unit 11: C,D,K,L (1x)
Biol. Unit 12: F,G,N,O (1x)
Keywords
:
Gtpase Rac3, Small Gtp Binding Protein, P21 Rac, Ras-Related C3 Botulinum Toxin Substrate 3, Signalling Protein, Crib, Kinase, Structural Genomics, Structural Genomics Consortium, Sgc, Protein Binding-Transferase Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
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)
Reference
:
E. Ugochukwu, X. Yang, J. M. Elkins, N. Burgess-Brown, S. Knapp, D. A. Doyle
The Crystal Structure Of The Human Rac3 In Complex With The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
To Be Published
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close entry info
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
1d: CHLORIDE ION (CLd)
1e: CHLORIDE ION (CLe)
1f: CHLORIDE ION (CLf)
1g: CHLORIDE ION (CLg)
1h: CHLORIDE ION (CLh)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
3a: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPa)
3b: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPb)
3c: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPc)
3d: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPd)
3e: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPe)
3f: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPf)
3g: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPg)
3h: PHOSPHOMETHYLPHOSPHONIC ACID GUANY... (GCPh)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
4d: MAGNESIUM ION (MGd)
4e: MAGNESIUM ION (MGe)
4f: MAGNESIUM ION (MGf)
4g: MAGNESIUM ION (MGg)
4h: MAGNESIUM ION (MGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
-1
Ligand/Ion
CHLORIDE ION
2
EDO
1
Ligand/Ion
1,2-ETHANEDIOL
3
GCP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID GUANYLATE ESTER
4
MG
-1
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC6 (SOFTWARE)
2: BC9 (SOFTWARE)
3: CC2 (SOFTWARE)
4: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC6
SOFTWARE
THR D:17 , THR D:35 , GCP D:200 , HOH D:1317 , HOH D:1328
BINDING SITE FOR RESIDUE MG D 202
2
BC9
SOFTWARE
ALA C:13 , VAL C:14 , GLY C:15 , LYS C:16 , THR C:17 , CYS C:18 , PHE C:28 , TYR C:32 , PRO C:34 , THR C:35 , GLY C:60 , LYS C:116 , ASP C:118 , LEU C:119 , SER C:158 , ALA C:159 , LEU C:160 , MG C:202 , EDO C:1302 , HOH C:1303 , HOH C:1307 , HOH C:1308 , HOH C:1321 , HOH C:1330 , HOH C:1338 , HOH C:1339 , HOH C:1360 , GLN L:27
BINDING SITE FOR RESIDUE GCP C 200
3
CC2
SOFTWARE
ALA D:13 , VAL D:14 , GLY D:15 , LYS D:16 , THR D:17 , CYS D:18 , PHE D:28 , TYR D:32 , PRO D:34 , THR D:35 , GLY D:60 , LYS D:116 , ASP D:118 , SER D:158 , ALA D:159 , LEU D:160 , MG D:202 , EDO D:1303 , HOH D:1305 , HOH D:1317 , HOH D:1328 , HOH D:1330 , HOH D:1333 , HOH D:1334 , HOH D:1339 , HOH D:1340 , GLN K:27
BINDING SITE FOR RESIDUE GCP D 200
4
CC7
SOFTWARE
THR D:17 , GLU D:31 , TYR D:32 , ILE D:33 , GCP D:200 , HOH D:1364
BINDING SITE FOR RESIDUE EDO D 1303
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 2)
Info
All PROSITE Patterns/Profiles
1: RHO (D:1-176)
2: CRIB (L:11-24)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RHO
PS51420
small GTPase Rho family profile.
RAC3_HUMAN
1-176
1
-
-
-
D:1-176
-
-
-
2
CRIB
PS50108
CRIB domain profile.
PAK4_HUMAN
11-24
1
-
-
-
L:11-24
-
-
-
-
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2ov2a_ (A:)
1b: SCOP_d2ov2f_ (F:)
1c: SCOP_d2ov2g_ (G:)
1d: SCOP_d2ov2h_ (H:)
1e: SCOP_d2ov2b_ (B:)
1f: SCOP_d2ov2c_ (C:)
1g: SCOP_d2ov2d_ (D:)
1h: SCOP_d2ov2e_ (E:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
automated matches
(173)
Human (Homo sapiens) [TaxId: 9606]
(112)
1a
d2ov2a_
A:
1b
d2ov2f_
F:
1c
d2ov2g_
G:
1d
d2ov2h_
H:
1e
d2ov2b_
B:
1f
d2ov2c_
C:
1g
d2ov2d_
D:
1h
d2ov2e_
E:
[
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2ov2D00 (D:0-178)
1b: CATH_2ov2F00 (F:0-178)
1c: CATH_2ov2A00 (A:1-178)
1d: CATH_2ov2B00 (B:0-177)
1e: CATH_2ov2C00 (C:1-178)
1f: CATH_2ov2G00 (G:1-178)
1g: CATH_2ov2H00 (H:0-178)
1h: CATH_2ov2E00 (E:2-178)
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)
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2ov2D00
D:0-178
1b
2ov2F00
F:0-178
1c
2ov2A00
A:1-178
1d
2ov2B00
B:0-177
1e
2ov2C00
C:1-178
1f
2ov2G00
G:1-178
1g
2ov2H00
H:0-178
1h
2ov2E00
E:2-178
[
close CATH info
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Pfam Domains
(2, 16)
Info
all PFAM domains
1a: PFAM_Ras_2ov2H01 (H:5-177)
1b: PFAM_Ras_2ov2H02 (H:5-177)
1c: PFAM_Ras_2ov2H03 (H:5-177)
1d: PFAM_Ras_2ov2H04 (H:5-177)
1e: PFAM_Ras_2ov2H05 (H:5-177)
1f: PFAM_Ras_2ov2H06 (H:5-177)
1g: PFAM_Ras_2ov2H07 (H:5-177)
1h: PFAM_Ras_2ov2H08 (H:5-177)
2a: PFAM_PBD_2ov2P01 (P:10-42)
2b: PFAM_PBD_2ov2P02 (P:10-42)
2c: PFAM_PBD_2ov2P03 (P:10-42)
2d: PFAM_PBD_2ov2P04 (P:10-42)
2e: PFAM_PBD_2ov2P05 (P:10-42)
2f: PFAM_PBD_2ov2P06 (P:10-42)
2g: PFAM_PBD_2ov2P07 (P:10-42)
2h: PFAM_PBD_2ov2P08 (P:10-42)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
Ras
(176)
Homo sapiens (Human)
(141)
1a
Ras-2ov2H01
H:5-177
1b
Ras-2ov2H02
H:5-177
1c
Ras-2ov2H03
H:5-177
1d
Ras-2ov2H04
H:5-177
1e
Ras-2ov2H05
H:5-177
1f
Ras-2ov2H06
H:5-177
1g
Ras-2ov2H07
H:5-177
1h
Ras-2ov2H08
H:5-177
Clan
:
no clan defined [family: PBD]
(6)
Family
:
PBD
(6)
Homo sapiens (Human)
(6)
2a
PBD-2ov2P01
P:10-42
2b
PBD-2ov2P02
P:10-42
2c
PBD-2ov2P03
P:10-42
2d
PBD-2ov2P04
P:10-42
2e
PBD-2ov2P05
P:10-42
2f
PBD-2ov2P06
P:10-42
2g
PBD-2ov2P07
P:10-42
2h
PBD-2ov2P08
P:10-42
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Asymmetric Unit 1
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Asym.Unit (302 KB)
Header - Asym.Unit
Biol.Unit 1 (42 KB)
Header - Biol.Unit 1
Biol.Unit 10 (79 KB)
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Biol.Unit 11 (77 KB)
Header - Biol.Unit 11
Biol.Unit 12 (77 KB)
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Biol.Unit 2 (43 KB)
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Biol.Unit 8 (41 KB)
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