PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2OUS
Asym. Unit
Info
Asym.Unit (119 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (59 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
CRYSTAL STRUCTURE OF PDE10A2 MUTANT D674A
Authors
:
H. C. Wang, Y. D. Liu, J. Hou, M. Y. Zheng, H. Robinson
Date
:
12 Feb 07 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pde, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wang, Y. Liu, J. Hou, M. Zheng, H. Robinson, H. Ke
From The Cover: Structural Insight Into Substrate Specificity Of Phosphodiesterase 10.
Proc. Natl. Acad. Sci. Usa V. 104 5782 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 2)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:1 , HOH A:2 , HOH A:3 , HOH A:4 , HOH A:5 , ASP A:564
BINDING SITE FOR RESIDUE MG A 777
2
AC2
SOFTWARE
HOH B:11 , HOH B:13 , HOH B:14 , HOH B:15 , HOH B:16 , ASP B:564
BINDING SITE FOR RESIDUE MG B 777
[
close Site info
]
SAPs(SNPs)/Variants
(2, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047822 (R716K, chain A/B, )
2: VAR_047823 (D717N, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047822
R
706
K
PDE10_HUMAN
Polymorphism
2224252
A/B
R
716
K
2
UniProt
VAR_047823
D
707
N
PDE10_HUMAN
Polymorphism
2860112
A/B
D
717
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PDEASE_I (A:563-574,B:563-574)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDEASE_I
PS00126
3'5'-cyclic nucleotide phosphodiesterases signature.
PDE10_HUMAN
553-564
2
A:563-574
B:563-574
[
close PROSITE info
]
Exons
(9, 18)
Info
All Exons
Exon 1.16 (A:446-474 | B:446-474)
Exon 1.17 (A:474-502 | B:474-502)
Exon 1.18 (A:502-552 | B:502-552)
Exon 1.19 (A:553-604 | B:553-604)
Exon 1.20 (A:605-662 | B:605-662)
Exon 1.21 (A:662-699 | B:662-699)
Exon 1.22 (A:700-726 | B:700-726)
Exon 1.23 (A:727-756 | B:727-756)
Exon 1.24b (A:756-771 | B:756-774)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.15/1.16
02: Boundary 1.16/1.17
03: Boundary 1.17/1.18
04: Boundary 1.18/1.19
05: Boundary 1.19/1.20
06: Boundary 1.20/1.21
07: Boundary 1.21/1.22
08: Boundary 1.22/1.23
09: Boundary 1.23/1.24b
10: Boundary 1.24b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000366882
1a
ENSE00001442893
chr6:
166075588-166075435
154
PDE10_HUMAN
-
0
0
-
-
1.2a
ENST00000366882
2a
ENSE00001442892
chr6:
165989937-165989900
38
PDE10_HUMAN
1-13
13
0
-
-
1.4b
ENST00000366882
4b
ENSE00001152350
chr6:
165957056-165956928
129
PDE10_HUMAN
13-56
44
0
-
-
1.5
ENST00000366882
5
ENSE00001010817
chr6:
165895831-165895803
29
PDE10_HUMAN
56-65
10
0
-
-
1.6
ENST00000366882
6
ENSE00000828843
chr6:
165863850-165863730
121
PDE10_HUMAN
66-106
41
0
-
-
1.7
ENST00000366882
7
ENSE00000766019
chr6:
165862465-165862416
50
PDE10_HUMAN
106-122
17
0
-
-
1.8
ENST00000366882
8
ENSE00000766017
chr6:
165848865-165848725
141
PDE10_HUMAN
123-169
47
0
-
-
1.9
ENST00000366882
9
ENSE00000766015
chr6:
165846617-165846462
156
PDE10_HUMAN
170-221
52
0
-
-
1.10
ENST00000366882
10
ENSE00000766013
chr6:
165844960-165844910
51
PDE10_HUMAN
222-238
17
0
-
-
1.11
ENST00000366882
11
ENSE00000766011
chr6:
165843833-165843775
59
PDE10_HUMAN
239-258
20
0
-
-
1.12
ENST00000366882
12
ENSE00000766009
chr6:
165842197-165842146
52
PDE10_HUMAN
258-275
18
0
-
-
1.13
ENST00000366882
13
ENSE00000766008
chr6:
165832265-165832123
143
PDE10_HUMAN
276-323
48
0
-
-
1.14
ENST00000366882
14
ENSE00000766007
chr6:
165829769-165829677
93
PDE10_HUMAN
323-354
32
0
-
-
1.15
ENST00000366882
15
ENSE00000766006
chr6:
165827175-165826989
187
PDE10_HUMAN
354-416
63
0
-
-
1.16
ENST00000366882
16
ENSE00000766005
chr6:
165809948-165809806
143
PDE10_HUMAN
417-464
48
2
A:446-474
B:446-474
29
29
1.17
ENST00000366882
17
ENSE00000766004
chr6:
165808753-165808670
84
PDE10_HUMAN
464-492
29
2
A:474-502
B:474-502
29
29
1.18
ENST00000366882
18
ENSE00000766003
chr6:
165806285-165806135
151
PDE10_HUMAN
492-542
51
2
A:502-552
B:502-552
51
51
1.19
ENST00000366882
19
ENSE00000766002
chr6:
165801942-165801787
156
PDE10_HUMAN
543-594
52
2
A:553-604
B:553-604
52
52
1.20
ENST00000366882
20
ENSE00000766001
chr6:
165792855-165792683
173
PDE10_HUMAN
595-652
58
2
A:605-662
B:605-662
58
58
1.21
ENST00000366882
21
ENSE00000765999
chr6:
165756991-165756880
112
PDE10_HUMAN
652-689
38
2
A:662-699
B:662-699
38
38
1.22
ENST00000366882
22
ENSE00000765998
chr6:
165752847-165752767
81
PDE10_HUMAN
690-716
27
2
A:700-726
B:700-726
27
27
1.23
ENST00000366882
23
ENSE00000765997
chr6:
165749700-165749612
89
PDE10_HUMAN
717-746
30
2
A:727-756
B:727-756
30
30
1.24b
ENST00000366882
24b
ENSE00001442887
chr6:
165746616-165740776
5841
PDE10_HUMAN
746-779
34
2
A:756-771
B:756-774
16
19
[
close EXON info
]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ousa_ (A:)
1b: SCOP_d2ousb_ (B:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
automated matches
(60)
Protein domain
:
automated matches
(60)
Human (Homo sapiens) [TaxId: 9606]
(44)
1a
d2ousa_
A:
1b
d2ousb_
B:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDEase_I_2ousB01 (B:524-759)
1b: PFAM_PDEase_I_2ousB02 (B:524-759)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HD_PDEase
(93)
Family
:
PDEase_I
(77)
Homo sapiens (Human)
(71)
1a
PDEase_I-2ousB01
B:524-759
1b
PDEase_I-2ousB02
B:524-759
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (119 KB)
Header - Asym.Unit
Biol.Unit 1 (59 KB)
Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2OUS
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help