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Biol. Unit 1
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Asym.Unit (117 KB)
Biol.Unit 1 (59 KB)
Biol.Unit 2 (57 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PDE10A2 MUTANT D674A IN COMPLEX WITH CAMP
Authors
:
H. C. Wang, Y. D. Liu, J. Hou, M. Y. Zheng, H. Robinson
Date
:
12 Feb 07 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.45
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Pde10, Camp, Substrate Specificity, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Wang, Y. Liu, J. Hou, M. Zheng, H. Robinson, H. Ke
From The Cover: Structural Insight Into Substrate Specificity Of Phosphodiesterase 10.
Proc. Natl. Acad. Sci. Usa V. 104 5782 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHA... (CMPa)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
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Label:
No.
Name
Count
Type
Full Name
1
CMP
1
Ligand/Ion
ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
2
MG
-1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC3 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:1 , HOH A:2 , HOH A:3 , HOH A:4 , HOH A:5 , ASP A:564
BINDING SITE FOR RESIDUE MG A 777
2
AC3
SOFTWARE
HOH A:1 , HOH A:7 , HOH A:8 , HOH A:9 , HOH A:10 , HOH A:301 , HIS A:525 , LEU A:635 , LEU A:675 , ILE A:692 , PHE A:696 , GLN A:726 , PHE A:729 , LEU B:706
BINDING SITE FOR RESIDUE CMP A 778
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SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_047822 (R716K, chain A, )
2: VAR_047823 (D717N, chain A, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047822
R
706
K
PDE10_HUMAN
Polymorphism
2224252
A
R
716
K
2
UniProt
VAR_047823
D
707
N
PDE10_HUMAN
Polymorphism
2860112
A
D
717
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDEASE_I (A:563-574)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDEASE_I
PS00126
3'5'-cyclic nucleotide phosphodiesterases signature.
PDE10_HUMAN
553-564
1
A:563-574
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2oura_ (A:)
1b: SCOP_d2ourb_ (B:)
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Class
:
All alpha proteins
(14657)
Fold
:
HD-domain/PDEase-like
(204)
Superfamily
:
HD-domain/PDEase-like
(204)
Family
:
automated matches
(60)
Protein domain
:
automated matches
(60)
Human (Homo sapiens) [TaxId: 9606]
(44)
1a
d2oura_
A:
1b
d2ourb_
B:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PDEase_I_2ourB01 (B:524-759)
1b: PFAM_PDEase_I_2ourB02 (B:524-759)
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Clans
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Organisms
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(
)
Clan
:
HD_PDEase
(93)
Family
:
PDEase_I
(77)
Homo sapiens (Human)
(71)
1a
PDEase_I-2ourB01
B:524-759
1b
PDEase_I-2ourB02
B:524-759
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