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2OUI
Asym. Unit
Info
Asym.Unit (252 KB)
Biol.Unit 1 (246 KB)
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(1)
Title
:
D275P MUTANT OF ALCOHOL DEHYDROGENASE FROM PROTOZOA ENTAMOEBA HISTOLYTICA
Authors
:
F. Frolow, L. Shimon, Y. Burstein, E. Goihberg, M. Peretz, O. Dym
Date
:
11 Feb 07 (Deposition) - 12 Feb 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.77
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Tetramer, Metal-Binding, Nadp, Oxidoreductase, P275D Mutation, Cacodylate Ion, Thermosatbility, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Goihberg, O. Dym, S. Tel-Or, L. Shimon, F. Frolow, M. Peretz, Y. Burstein
Thermal Stabilization Of The Protozoan Entamoeba Histolytic Alcohol Dehydrogenase By A Single Proline Substitution.
Proteins V. 72 711 2008
[
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Hetero Components
(8, 28)
Info
All Hetero Components
1a: PENTAETHYLENE GLYCOL (1PEa)
2a: CACODYLATE ION (CACa)
2b: CACODYLATE ION (CACb)
2c: CACODYLATE ION (CACc)
2d: CACODYLATE ION (CACd)
3a: CHLORIDE ION (CLa)
4a: 1,2-ETHANEDIOL (EDOa)
4b: 1,2-ETHANEDIOL (EDOb)
4c: 1,2-ETHANEDIOL (EDOc)
4d: 1,2-ETHANEDIOL (EDOd)
4e: 1,2-ETHANEDIOL (EDOe)
4f: 1,2-ETHANEDIOL (EDOf)
4g: 1,2-ETHANEDIOL (EDOg)
4h: 1,2-ETHANEDIOL (EDOh)
4i: 1,2-ETHANEDIOL (EDOi)
5a: NITRATE ION (NO3a)
5b: NITRATE ION (NO3b)
5c: NITRATE ION (NO3c)
5d: NITRATE ION (NO3d)
6a: TETRAETHYLENE GLYCOL (PG4a)
7a: TRIETHYLENE GLYCOL (PGEa)
7b: TRIETHYLENE GLYCOL (PGEb)
7c: TRIETHYLENE GLYCOL (PGEc)
7d: TRIETHYLENE GLYCOL (PGEd)
8a: ZINC ION (ZNa)
8b: ZINC ION (ZNb)
8c: ZINC ION (ZNc)
8d: ZINC ION (ZNd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1PE
1
Ligand/Ion
PENTAETHYLENE GLYCOL
2
CAC
4
Ligand/Ion
CACODYLATE ION
3
CL
1
Ligand/Ion
CHLORIDE ION
4
EDO
9
Ligand/Ion
1,2-ETHANEDIOL
5
NO3
4
Ligand/Ion
NITRATE ION
6
PG4
1
Ligand/Ion
TETRAETHYLENE GLYCOL
7
PGE
4
Ligand/Ion
TRIETHYLENE GLYCOL
8
ZN
4
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(28, 28)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:37 , SER A:39 , HIS A:59 , ASP A:150 , CAC A:1001
BINDING SITE FOR RESIDUE ZN A 361
02
AC2
SOFTWARE
THR A:38 , GLY A:176 , PRO A:177 , VAL A:178 , HOH A:5055 , HOH A:5104
BINDING SITE FOR RESIDUE NO3 A 3001
03
AC3
SOFTWARE
LYS A:201 , CYS A:204 , ASP A:205 , ASN A:217 , GLU C:325 , ILE C:351 , HIS C:352
BINDING SITE FOR RESIDUE NO3 A 3003
04
AC4
SOFTWARE
CYS A:37 , SER A:39 , HIS A:59 , ASP A:150 , THR A:154 , ZN A:361 , EDO A:2001 , HOH A:5042 , MET B:285
BINDING SITE FOR RESIDUE CAC A 1001
05
AC5
SOFTWARE
CYS B:37 , HIS B:59 , ASP B:150 , CAC B:1001
BINDING SITE FOR RESIDUE ZN B 361
06
AC6
SOFTWARE
PRO B:24 , GLY B:69 , SER B:70 , HOH B:5100
BINDING SITE FOR RESIDUE NO3 B 3002
07
AC7
SOFTWARE
MET A:285 , CYS B:37 , SER B:39 , HIS B:59 , ILE B:86 , ASP B:150 , THR B:154 , ZN B:361 , HOH B:5067
BINDING SITE FOR RESIDUE CAC B 1001
08
AC8
SOFTWARE
CYS C:37 , HIS C:59 , ASP C:150 , CAC C:1001
BINDING SITE FOR RESIDUE ZN C 361
09
AC9
SOFTWARE
CYS C:37 , SER C:39 , HIS C:59 , ILE C:86 , ASP C:150 , THR C:154 , ZN C:361 , HOH C:5052 , MET D:285
BINDING SITE FOR RESIDUE CAC C 1001
10
BC1
SOFTWARE
CYS D:37 , SER D:39 , HIS D:59 , ASP D:150 , CAC D:1001
BINDING SITE FOR RESIDUE ZN D 361
11
BC2
SOFTWARE
ASP D:139 , SER D:310 , HOH D:7222 , HOH D:7251
BINDING SITE FOR RESIDUE NO3 D 3004
12
BC3
SOFTWARE
MET C:285 , CYS D:37 , SER D:39 , HIS D:59 , ILE D:86 , ASP D:150 , THR D:154 , ZN D:361 , HOH D:7023
BINDING SITE FOR RESIDUE CAC D 1001
13
BC4
SOFTWARE
HIS D:59 , GLU D:60 , ALA D:61 , VAL D:83
BINDING SITE FOR RESIDUE CL D 7001
14
BC5
SOFTWARE
SER A:39 , VAL A:265 , ASN A:266 , TYR A:267 , CAC A:1001 , HOH A:5145
BINDING SITE FOR RESIDUE EDO A 2001
15
BC6
SOFTWARE
GLY A:174 , ILE A:175 , GLY A:176 , GLY A:198 , SER A:199 , ARG A:200 , HOH A:5255 , HOH A:5269
BINDING SITE FOR RESIDUE EDO A 2003
16
BC7
SOFTWARE
GLU A:160 , LEU A:189 , EDO A:2008 , LYS D:165 , LEU D:166 , HOH D:7020 , HOH D:7065
BINDING SITE FOR RESIDUE EDO A 2007
17
BC8
SOFTWARE
GLU A:160 , ASN A:163 , ILE A:164 , LYS A:165 , EDO A:2007 , HOH A:5078 , HOH A:5165
BINDING SITE FOR RESIDUE EDO A 2008
18
BC9
SOFTWARE
LYS A:2 , GLU A:328
BINDING SITE FOR RESIDUE PGE A 5001
19
CC1
SOFTWARE
ASP B:89 , TRP B:90 , GLY B:91 , GLU B:128 , HOH B:5030 , HOH B:5217
BINDING SITE FOR RESIDUE EDO B 2004
20
CC2
SOFTWARE
GLN B:96 , EDO D:2009
BINDING SITE FOR RESIDUE EDO B 2005
21
CC3
SOFTWARE
GLU B:160 , ASN B:163 , ILE B:164 , LYS B:165 , HOH B:5170
BINDING SITE FOR RESIDUE EDO B 2006
22
CC4
SOFTWARE
LYS B:2 , TRP B:14 , GLU B:328
BINDING SITE FOR RESIDUE PGE B 5003
23
CC5
SOFTWARE
GLU B:160 , LEU B:161 , HIS B:291 , HOH B:5246 , HOH B:5247
BINDING SITE FOR RESIDUE PGE B 5004
24
CC6
SOFTWARE
GLU C:160 , ASN C:163 , ILE C:164 , LEU C:189 , HOH C:5201
BINDING SITE FOR RESIDUE EDO C 2002
25
CC7
SOFTWARE
ASP A:205 , LYS C:2 , TRP C:14 , GLU C:16 , GLU C:122 , GLU C:328
BINDING SITE FOR RESIDUE 1PE C 4001
26
CC8
SOFTWARE
SER A:95 , GLN A:96 , SER C:95 , GLN C:96 , GLY C:98
BINDING SITE FOR RESIDUE PGE C 5002
27
CC9
SOFTWARE
EDO B:2005 , GLY D:98
BINDING SITE FOR RESIDUE EDO D 2009
28
DC1
SOFTWARE
LYS D:2 , TRP D:14 , GLU D:328
BINDING SITE FOR RESIDUE PG4 D 6001
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: ADH_ZINC (A:58-72,B:58-72,C:58-72,D:58-72)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ADH_ZINC
PS00059
Zinc-containing alcohol dehydrogenases signature.
ADH1_ENTHI
58-72
4
A:58-72
B:58-72
C:58-72
D:58-72
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_2ouiA02 (A:162-292)
1b: CATH_2ouiB02 (B:162-292)
1c: CATH_2ouiC02 (C:162-292)
1d: CATH_2ouiD02 (D:162-292)
2a: CATH_2ouiA01 (A:1-161,A:293-360)
2b: CATH_2ouiB01 (B:1-161,B:293-360)
2c: CATH_2ouiC01 (C:1-161,C:293-360)
2d: CATH_2ouiD01 (D:1-161,D:293-360)
View:
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Classes
(
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(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
Entamoeba histolytica. Organism_taxid: 5759.
(2)
1a
2ouiA02
A:162-292
1b
2ouiB02
B:162-292
1c
2ouiC02
C:162-292
1d
2ouiD02
D:162-292
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Quinone Oxidoreductase; Chain A, domain 1
(131)
Homologous Superfamily
:
Medium-chain alcohol dehydrogenases, catalytic domain
(131)
Entamoeba histolytica. Organism_taxid: 5759.
(2)
2a
2ouiA01
A:1-161,A:293-360
2b
2ouiB01
B:1-161,B:293-360
2c
2ouiC01
C:1-161,C:293-360
2d
2ouiD01
D:1-161,D:293-360
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_ADH_N_2ouiD01 (D:24-134)
1b: PFAM_ADH_N_2ouiD02 (D:24-134)
1c: PFAM_ADH_N_2ouiD03 (D:24-134)
1d: PFAM_ADH_N_2ouiD04 (D:24-134)
2a: PFAM_ADH_zinc_N_2ouiD05 (D:177-310)
2b: PFAM_ADH_zinc_N_2ouiD06 (D:177-310)
2c: PFAM_ADH_zinc_N_2ouiD07 (D:177-310)
2d: PFAM_ADH_zinc_N_2ouiD08 (D:177-310)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
GroES
(70)
Family
:
ADH_N
(62)
Entamoeba histolytica
(2)
1a
ADH_N-2ouiD01
D:24-134
1b
ADH_N-2ouiD02
D:24-134
1c
ADH_N-2ouiD03
D:24-134
1d
ADH_N-2ouiD04
D:24-134
Clan
:
NADP_Rossmann
(1239)
Family
:
ADH_zinc_N
(75)
Entamoeba histolytica
(2)
2a
ADH_zinc_N-2ouiD05
D:177-310
2b
ADH_zinc_N-2ouiD06
D:177-310
2c
ADH_zinc_N-2ouiD07
D:177-310
2d
ADH_zinc_N-2ouiD08
D:177-310
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