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2OTC
Asym. Unit
Info
Asym.Unit (484 KB)
Biol.Unit 1 (164 KB)
Biol.Unit 2 (164 KB)
Biol.Unit 3 (164 KB)
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(1)
Title
:
ORNITHINE TRANSCARBAMOYLASE COMPLEXED WITH N-(PHOSPHONACETYL)-L-ORNITHINE
Authors
:
Y. Ha, N. M. Allewell
Date
:
15 Jun 97 (Deposition) - 17 Jun 98 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Biol. Unit 3: G,H,I (1x)
Keywords
:
Transferase, Otcase, Ornithine, Transcarbamoylase, Arginine Synthesis, Urea Cycle
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Ha, M. T. Mccann, M. Tuchman, N. M. Allewell
Substrate-Induced Conformational Change In A Trimeric Ornithine Transcarbamoylase.
Proc. Natl. Acad. Sci. Usa V. 94 9550 1997
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(1, 9)
Info
All Hetero Components
1a: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOa)
1b: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOb)
1c: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOc)
1d: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOd)
1e: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOe)
1f: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOf)
1g: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOg)
1h: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOh)
1i: N-(PHOSPHONOACETYL)-L-ORNITHINE (PAOi)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PAO
9
Ligand/Ion
N-(PHOSPHONOACETYL)-L-ORNITHINE
[
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]
Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:55 , THR A:56 , ARG A:57 , THR A:58 , ARG A:106 , LEU A:128 , HIS A:133 , ASN A:166 , ASN A:167 , ASP A:231 , SER A:235 , MET A:236 , LEU A:274 , ARG A:319 , HOH A:336 , GLN C:82
BINDING SITE FOR RESIDUE PAO A 334
2
AC2
SOFTWARE
GLN A:82 , SER B:55 , THR B:56 , ARG B:57 , THR B:58 , ARG B:106 , LEU B:128 , HIS B:133 , ASN B:166 , ASN B:167 , ASP B:231 , SER B:235 , MET B:236 , LEU B:274 , ARG B:319 , HOH B:337
BINDING SITE FOR RESIDUE PAO B 334
3
AC3
SOFTWARE
GLN B:82 , SER C:55 , THR C:56 , ARG C:57 , THR C:58 , ARG C:106 , LEU C:128 , HIS C:133 , ASN C:166 , ASN C:167 , ASP C:231 , SER C:235 , MET C:236 , LEU C:274 , ARG C:319 , HOH C:337
BINDING SITE FOR RESIDUE PAO C 334
4
AC4
SOFTWARE
SER D:55 , THR D:56 , ARG D:57 , THR D:58 , ARG D:106 , LEU D:128 , HIS D:133 , ASN D:166 , ASN D:167 , ASP D:231 , SER D:235 , MET D:236 , LEU D:274 , ARG D:319 , HOH D:336 , GLN F:82
BINDING SITE FOR RESIDUE PAO D 334
5
AC5
SOFTWARE
GLN D:82 , SER E:55 , THR E:56 , ARG E:57 , THR E:58 , ARG E:106 , LEU E:128 , HIS E:133 , ASN E:166 , ASN E:167 , ASP E:231 , SER E:235 , MET E:236 , LEU E:274 , ARG E:319 , HOH E:337
BINDING SITE FOR RESIDUE PAO E 334
6
AC6
SOFTWARE
GLN E:82 , SER F:55 , THR F:56 , ARG F:57 , THR F:58 , ARG F:106 , LEU F:128 , HIS F:133 , ASN F:166 , ASN F:167 , ASP F:231 , SER F:235 , MET F:236 , LEU F:274 , ARG F:319 , HOH F:337
BINDING SITE FOR RESIDUE PAO F 334
7
AC7
SOFTWARE
SER G:55 , THR G:56 , ARG G:57 , THR G:58 , ARG G:106 , LEU G:128 , HIS G:133 , ASN G:166 , ASN G:167 , ASP G:231 , SER G:235 , MET G:236 , LEU G:274 , ARG G:319 , HOH G:336 , GLN I:82
BINDING SITE FOR RESIDUE PAO G 334
8
AC8
SOFTWARE
GLN G:82 , SER H:55 , THR H:56 , ARG H:57 , THR H:58 , ARG H:106 , LEU H:128 , HIS H:133 , ASN H:166 , ASN H:167 , ASP H:231 , SER H:235 , MET H:236 , LEU H:274 , ARG H:319 , HOH H:337
BINDING SITE FOR RESIDUE PAO H 334
9
AC9
SOFTWARE
GLN H:82 , SER I:55 , THR I:56 , ARG I:57 , THR I:58 , ARG I:106 , LEU I:128 , HIS I:133 , ASN I:166 , ASN I:167 , ASP I:231 , SER I:235 , MET I:236 , LEU I:274 , ARG I:319 , HOH I:337
BINDING SITE FOR RESIDUE PAO I 334
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 9)
Info
All PROSITE Patterns/Profiles
1: CARBAMOYLTRANSFERASE (A:51-58,B:51-58,C:51-58,D:51-58,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CARBAMOYLTRANSFERASE
PS00097
Aspartate and ornithine carbamoyltransferases signature.
OTC1_ECOLI
52-59
9
A:51-58
B:51-58
C:51-58
D:51-58
E:51-58
F:51-58
G:51-58
H:51-58
I:51-58
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 18)
Info
All SCOP Domains
1a: SCOP_d2otca1 (A:1-150)
1b: SCOP_d2otcc1 (C:1-150)
1c: SCOP_d2otcc2 (C:151-333)
1d: SCOP_d2otcd1 (D:1-150)
1e: SCOP_d2otcd2 (D:151-333)
1f: SCOP_d2otce1 (E:1-150)
1g: SCOP_d2otce2 (E:151-333)
1h: SCOP_d2otcf1 (F:1-150)
1i: SCOP_d2otcf2 (F:151-333)
1j: SCOP_d2otcg1 (G:1-150)
1k: SCOP_d2otcg2 (G:151-333)
1l: SCOP_d2otch1 (H:1-150)
1m: SCOP_d2otch2 (H:151-333)
1n: SCOP_d2otci1 (I:1-150)
1o: SCOP_d2otci2 (I:151-333)
1p: SCOP_d2otca2 (A:151-333)
1q: SCOP_d2otcb1 (B:1-150)
1r: SCOP_d2otcb2 (B:151-333)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ATC-like
(129)
Superfamily
:
Aspartate/ornithine carbamoyltransferase
(122)
Family
:
Aspartate/ornithine carbamoyltransferase
(87)
Protein domain
:
Ornithine transcarbamoylase
(13)
Escherichia coli [TaxId: 562]
(3)
1a
d2otca1
A:1-150
1b
d2otcc1
C:1-150
1c
d2otcc2
C:151-333
1d
d2otcd1
D:1-150
1e
d2otcd2
D:151-333
1f
d2otce1
E:1-150
1g
d2otce2
E:151-333
1h
d2otcf1
F:1-150
1i
d2otcf2
F:151-333
1j
d2otcg1
G:1-150
1k
d2otcg2
G:151-333
1l
d2otch1
H:1-150
1m
d2otch2
H:151-333
1n
d2otci1
I:1-150
1o
d2otci2
I:151-333
1p
d2otca2
A:151-333
1q
d2otcb1
B:1-150
1r
d2otcb2
B:151-333
[
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]
CATH Domains
(1, 18)
Info
all CATH domains
1a: CATH_2otcA01 (A:1-135,A:319-333)
1b: CATH_2otcB01 (B:1-135,B:319-333)
1c: CATH_2otcB02 (B:136-318)
1d: CATH_2otcC02 (C:136-318)
1e: CATH_2otcD02 (D:136-318)
1f: CATH_2otcE02 (E:136-318)
1g: CATH_2otcF02 (F:136-318)
1h: CATH_2otcG02 (G:136-318)
1i: CATH_2otcH02 (H:136-318)
1j: CATH_2otcI02 (I:136-318)
1k: CATH_2otcC01 (C:1-135,C:319-333)
1l: CATH_2otcD01 (D:1-135,D:319-333)
1m: CATH_2otcE01 (E:1-135,E:319-333)
1n: CATH_2otcF01 (F:1-135,F:319-333)
1o: CATH_2otcG01 (G:1-135,G:319-333)
1p: CATH_2otcH01 (H:1-135,H:319-333)
1q: CATH_2otcI01 (I:1-135,I:319-333)
1r: CATH_2otcA02 (A:136-318)
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(
)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1370, no name defined]
(91)
Escherichia coli bl21(de3). Organism_taxid: 469008. Strain: bl21 (de3). Cell_line: bl21.
(1)
1a
2otcA01
A:1-135,A:319-333
1b
2otcB01
B:1-135,B:319-333
1c
2otcB02
B:136-318
1d
2otcC02
C:136-318
1e
2otcD02
D:136-318
1f
2otcE02
E:136-318
1g
2otcF02
F:136-318
1h
2otcG02
G:136-318
1i
2otcH02
H:136-318
1j
2otcI02
I:136-318
1k
2otcC01
C:1-135,C:319-333
1l
2otcD01
D:1-135,D:319-333
1m
2otcE01
E:1-135,E:319-333
1n
2otcF01
F:1-135,F:319-333
1o
2otcG01
G:1-135,G:319-333
1p
2otcH01
H:1-135,H:319-333
1q
2otcI01
I:1-135,I:319-333
1r
2otcA02
A:136-318
[
close CATH info
]
Pfam Domains
(2, 18)
Info
all PFAM domains
1a: PFAM_OTCace_2otcI01 (I:154-330)
1b: PFAM_OTCace_2otcI02 (I:154-330)
1c: PFAM_OTCace_2otcI03 (I:154-330)
1d: PFAM_OTCace_2otcI04 (I:154-330)
1e: PFAM_OTCace_2otcI05 (I:154-330)
1f: PFAM_OTCace_2otcI06 (I:154-330)
1g: PFAM_OTCace_2otcI07 (I:154-330)
1h: PFAM_OTCace_2otcI08 (I:154-330)
1i: PFAM_OTCace_2otcI09 (I:154-330)
2a: PFAM_OTCace_N_2otcI10 (I:6-147)
2b: PFAM_OTCace_N_2otcI11 (I:6-147)
2c: PFAM_OTCace_N_2otcI12 (I:6-147)
2d: PFAM_OTCace_N_2otcI13 (I:6-147)
2e: PFAM_OTCace_N_2otcI14 (I:6-147)
2f: PFAM_OTCace_N_2otcI15 (I:6-147)
2g: PFAM_OTCace_N_2otcI16 (I:6-147)
2h: PFAM_OTCace_N_2otcI17 (I:6-147)
2i: PFAM_OTCace_N_2otcI18 (I:6-147)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: OTCace]
(48)
Family
:
OTCace
(48)
Escherichia coli (strain K12)
(21)
1a
OTCace-2otcI01
I:154-330
1b
OTCace-2otcI02
I:154-330
1c
OTCace-2otcI03
I:154-330
1d
OTCace-2otcI04
I:154-330
1e
OTCace-2otcI05
I:154-330
1f
OTCace-2otcI06
I:154-330
1g
OTCace-2otcI07
I:154-330
1h
OTCace-2otcI08
I:154-330
1i
OTCace-2otcI09
I:154-330
Clan
:
no clan defined [family: OTCace_N]
(48)
Family
:
OTCace_N
(48)
Escherichia coli (strain K12)
(21)
2a
OTCace_N-2otcI10
I:6-147
2b
OTCace_N-2otcI11
I:6-147
2c
OTCace_N-2otcI12
I:6-147
2d
OTCace_N-2otcI13
I:6-147
2e
OTCace_N-2otcI14
I:6-147
2f
OTCace_N-2otcI15
I:6-147
2g
OTCace_N-2otcI16
I:6-147
2h
OTCace_N-2otcI17
I:6-147
2i
OTCace_N-2otcI18
I:6-147
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