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2OT8
Asym. Unit
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Asym.Unit (246 KB)
Biol.Unit 1 (123 KB)
Biol.Unit 2 (121 KB)
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(1)
Title
:
KARYOPHERIN BETA2/TRANSPORTIN-HNRNPM NLS COMPLEX
Authors
:
A. E. Cansizoglu, Y. M. Chook
Date
:
07 Feb 07 (Deposition) - 10 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Heat Repeat, Nuclear Import Complex, Karyopherin, Transport Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. E. Cansizoglu, B. J. Lee, Z. C. Zhang, B. M. Fontoura, Y. M. Chook
Structure-Based Design Of A Pathway-Specific Nuclear Import Inhibitor.
Nat. Struct. Mol. Biol. V. 14 452 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_014455 (D26E, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_014455
D
34
E
TNPO1_HUMAN
Polymorphism
25661
B
D
26
E
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: IMPORTIN_B_NT (A:33-101,B:33-101)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
IMPORTIN_B_NT
PS50166
Importin-beta N-terminal domain profile.
TNPO1_HUMAN
41-109
2
A:33-101
B:33-101
[
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Exons
(24, 48)
Info
All Exons
Exon 1.2 (C:51-68 (gaps) | D:50-69)
Exon 2.5 (A:10-35 (gaps) | B:10-35)
Exon 2.6c (A:36-56 (gaps) | B:36-58 (gaps))
Exon 2.7c (A:62-111 | B:65-111)
Exon 2.8a (A:111-146 | B:111-146)
Exon 2.10b (A:147-191 | B:147-191 (gaps))
Exon 2.12a (A:191-218 | B:191-218)
Exon 2.13 (A:219-259 | B:219-259)
Exon 2.14 (A:260-299 | B:260-299)
Exon 2.15 (A:299-319 | B:299-319)
Exon 2.16c (A:367-376 | B:368-376)
Exon 2.17b (A:376-427 | B:376-427)
Exon 2.18a (A:427-502 | B:427-502)
Exon 2.19 (A:502-559 | B:502-559)
Exon 2.20 (A:560-588 | B:560-588)
Exon 2.21b (A:589-624 | B:589-624)
Exon 2.22a (A:625-677 | B:625-677)
Exon 2.23 (A:678-707 | B:678-707)
Exon 2.24 (A:707-740 | B:707-740)
Exon 2.25 (A:740-772 | B:740-772)
Exon 2.26 (A:772-797 | B:772-797)
Exon 2.27b (A:797-830 | B:797-830)
Exon 2.28 (A:831-855 | B:831-855)
Exon 2.29c (A:856-890 | B:856-890)
View:
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All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 2.1a/2.5
04: Boundary 2.5/2.6c
05: Boundary 2.6c/2.7c
06: Boundary 2.7c/2.8a
07: Boundary 2.8a/2.10b
08: Boundary 2.10b/2.12a
09: Boundary 2.12a/2.13
10: Boundary 2.13/2.14
11: Boundary 2.14/2.15
12: Boundary 2.15/2.16c
13: Boundary 2.16c/2.17b
14: Boundary 2.17b/2.18a
15: Boundary 2.18a/2.19
16: Boundary 2.19/2.20
17: Boundary 2.20/2.21b
18: Boundary 2.21b/2.22a
19: Boundary 2.22a/2.23
20: Boundary 2.23/2.24
21: Boundary 2.24/2.25
22: Boundary 2.25/2.26
23: Boundary 2.26/2.27b
24: Boundary 2.27b/2.28
25: Boundary 2.28/2.29c
26: Boundary 2.29c/2.30f
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000325495
1
ENSE00001293209
chr19:
8509651-8509995
345
HNRPM_HUMAN
1-38
38
0
-
-
1.2
ENST00000325495
2
ENSE00001295663
chr19:
8520289-8520458
170
HNRPM_HUMAN
38-95
58
2
C:51-68 (gaps)
D:50-69
18
20
1.3
ENST00000325495
3
ENSE00001679072
chr19:
8527413-8527465
53
HNRPM_HUMAN
95-112
18
0
-
-
1.4
ENST00000325495
4
ENSE00001766447
chr19:
8528381-8528388
8
HNRPM_HUMAN
113-115
3
0
-
-
1.5
ENST00000325495
5
ENSE00001154513
chr19:
8528477-8528570
94
HNRPM_HUMAN
115-146
32
0
-
-
1.6b
ENST00000325495
6b
ENSE00000954246
chr19:
8530208-8530399
192
HNRPM_HUMAN
147-210
64
0
-
-
1.7
ENST00000325495
7
ENSE00000909978
chr19:
8531119-8531272
154
HNRPM_HUMAN
211-262
52
0
-
-
1.8
ENST00000325495
8
ENSE00001618911
chr19:
8532419-8532468
50
HNRPM_HUMAN
262-278
17
0
-
-
1.9
ENST00000325495
9
ENSE00001317836
chr19:
8533658-8533718
61
HNRPM_HUMAN
279-299
21
0
-
-
1.10
ENST00000325495
10
ENSE00001290592
chr19:
8536210-8536311
102
HNRPM_HUMAN
299-333
35
0
-
-
1.11
ENST00000325495
11
ENSE00000909986
chr19:
8538548-8538592
45
HNRPM_HUMAN
333-348
16
0
-
-
1.12
ENST00000325495
12
ENSE00001307025
chr19:
8539051-8539128
78
HNRPM_HUMAN
348-374
27
0
-
-
1.13
ENST00000325495
13
ENSE00000909990
chr19:
8548042-8548095
54
HNRPM_HUMAN
374-392
19
0
-
-
1.14
ENST00000325495
14
ENSE00000909993
chr19:
8550487-8551289
803
HNRPM_HUMAN
392-659
268
0
-
-
1.15
ENST00000325495
15
ENSE00000909995
chr19:
8551908-8551959
52
HNRPM_HUMAN
660-677
18
0
-
-
1.16
ENST00000325495
16
ENSE00001299648
chr19:
8553575-8553885
311
HNRPM_HUMAN
677-730
54
0
-
-
2.1a
ENST00000337273
1a
ENSE00002137257
chr5:
72112139-72112579
441
TNPO1_HUMAN
1-5
5
0
-
-
2.5
ENST00000337273
5
ENSE00001678683
chr5:
72144212-72144325
114
TNPO1_HUMAN
6-43
38
2
A:10-35 (gaps)
B:10-35
26
26
2.6c
ENST00000337273
6c
ENSE00000752304
chr5:
72147071-72147146
76
TNPO1_HUMAN
44-69
26
2
A:36-56 (gaps)
B:36-58 (gaps)
21
23
2.7c
ENST00000337273
7c
ENSE00000534707
chr5:
72151601-72151750
150
TNPO1_HUMAN
69-119
51
2
A:62-111
B:65-111
50
47
2.8a
ENST00000337273
8a
ENSE00000752327
chr5:
72157635-72157741
107
TNPO1_HUMAN
119-154
36
2
A:111-146
B:111-146
36
36
2.10b
ENST00000337273
10b
ENSE00000752440
chr5:
72161423-72161556
134
TNPO1_HUMAN
155-199
45
2
A:147-191
B:147-191 (gaps)
45
45
2.12a
ENST00000337273
12a
ENSE00001659385
chr5:
72168466-72168547
82
TNPO1_HUMAN
199-226
28
2
A:191-218
B:191-218
28
28
2.13
ENST00000337273
13
ENSE00001619386
chr5:
72171442-72171564
123
TNPO1_HUMAN
227-267
41
2
A:219-259
B:219-259
41
41
2.14
ENST00000337273
14
ENSE00001752263
chr5:
72173055-72173173
119
TNPO1_HUMAN
268-307
40
2
A:260-299
B:260-299
40
40
2.15
ENST00000337273
15
ENSE00001797615
chr5:
72178294-72178354
61
TNPO1_HUMAN
307-327
21
2
A:299-319
B:299-319
21
21
2.16c
ENST00000337273
16c
ENSE00001805396
chr5:
72178891-72179059
169
TNPO1_HUMAN
328-384
57
2
A:367-376
B:368-376
10
9
2.17b
ENST00000337273
17b
ENSE00001752488
chr5:
72182897-72183049
153
TNPO1_HUMAN
384-435
52
2
A:376-427
B:376-427
52
52
2.18a
ENST00000337273
18a
ENSE00001670694
chr5:
72183905-72184130
226
TNPO1_HUMAN
435-510
76
2
A:427-502
B:427-502
76
76
2.19
ENST00000337273
19
ENSE00001603550
chr5:
72185613-72185784
172
TNPO1_HUMAN
510-567
58
2
A:502-559
B:502-559
58
58
2.20
ENST00000337273
20
ENSE00001611908
chr5:
72187637-72187723
87
TNPO1_HUMAN
568-596
29
2
A:560-588
B:560-588
29
29
2.21b
ENST00000337273
21b
ENSE00001762530
chr5:
72188966-72189073
108
TNPO1_HUMAN
597-632
36
2
A:589-624
B:589-624
36
36
2.22a
ENST00000337273
22a
ENSE00001717735
chr5:
72189204-72189362
159
TNPO1_HUMAN
633-685
53
2
A:625-677
B:625-677
53
53
2.23
ENST00000337273
23
ENSE00001743796
chr5:
72189443-72189530
88
TNPO1_HUMAN
686-715
30
2
A:678-707
B:678-707
30
30
2.24
ENST00000337273
24
ENSE00001660046
chr5:
72192285-72192383
99
TNPO1_HUMAN
715-748
34
2
A:707-740
B:707-740
34
34
2.25
ENST00000337273
25
ENSE00001687148
chr5:
72192883-72192978
96
TNPO1_HUMAN
748-780
33
2
A:740-772
B:740-772
33
33
2.26
ENST00000337273
26
ENSE00001743811
chr5:
72195833-72195908
76
TNPO1_HUMAN
780-805
26
2
A:772-797
B:772-797
26
26
2.27b
ENST00000337273
27b
ENSE00001600924
chr5:
72196801-72196900
100
TNPO1_HUMAN
805-838
34
2
A:797-830
B:797-830
34
34
2.28
ENST00000337273
28
ENSE00001730129
chr5:
72199536-72199610
75
TNPO1_HUMAN
839-863
25
2
A:831-855
B:831-855
25
25
2.29c
ENST00000337273
29c
ENSE00001718138
chr5:
72201130-72201272
143
TNPO1_HUMAN
864-898
35
2
A:856-890
B:856-890
35
35
2.30f
ENST00000337273
30f
ENSE00001925200
chr5:
72204536-72212560
8025
TNPO1_HUMAN
-
0
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_HEAT_EZ_2ot8B01 (B:411-465)
1b: PFAM_HEAT_EZ_2ot8B02 (B:411-465)
2a: PFAM_IBN_N_2ot8B03 (B:33-101)
2b: PFAM_IBN_N_2ot8B04 (B:33-101)
3a: PFAM_HnRNP_M_2ot8D01 (D:50-69)
3b: PFAM_HnRNP_M_2ot8D02 (D:50-69)
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(
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(
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(
)
(
)
Clan
:
TPR
(230)
Family
:
HEAT_EZ
(8)
Homo sapiens (Human)
(7)
1a
HEAT_EZ-2ot8B01
B:411-465
1b
HEAT_EZ-2ot8B02
B:411-465
Family
:
IBN_N
(25)
Homo sapiens (Human)
(16)
2a
IBN_N-2ot8B03
B:33-101
2b
IBN_N-2ot8B04
B:33-101
Clan
:
no clan defined [family: HnRNP_M]
(1)
Family
:
HnRNP_M
(1)
Homo sapiens (Human)
(1)
3a
HnRNP_M-2ot8D01
D:50-69
3b
HnRNP_M-2ot8D02
D:50-69
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Asym.Unit (246 KB)
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