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2OSC
Asym. Unit
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Asym.Unit (48 KB)
Biol.Unit 1 (44 KB)
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(1)
Title
:
SYNTHESIS, STRUCTURAL ANALYSIS, AND SAR STUDIES OF TRIAZINE DERIVATIVES AS POTENT, SELECTIVE TIE-2 INHIBITORS
Authors
:
S. F. Bellon, J. Kim
Date
:
05 Feb 07 (Deposition) - 20 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Kinase Domain Tie-2, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. L. Hodous, S. D. Geuns-Meyer, P. E. Hughes, B. K. Albrecht, S. Bellon, S. Caenepeel, V. J. Cee, S. C. Chaffee, M. Emery, J. Fretland, P. Gallant, Y. Gu, R. E. Johnson, J. L. Kim, A. M. Long, M. Morrison, P. R. Olivieri, V. F. Patel, A. Polverino, P. Rose, L. Wang, H. Zhao
Synthesis, Structural Analysis, And Sar Studies Of Triazine Derivatives As Potent, Selective Tie-2 Inhibitors.
Bioorg. Med. Chem. Lett. V. 17 2886 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: N-{4-METHYL-3-[(3-PYRIMIDIN-4-YLPY... (MUHa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MUH
1
Ligand/Ion
N-{4-METHYL-3-[(3-PYRIMIDIN-4-YLPYRIDIN-2-YL)AMINO]PHENYL}-3-(TRIFLUOROMETHYL)BENZAMIDE
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:855 , GLU A:872 , LEU A:876 , LEU A:879 , ILE A:902 , TYR A:904 , ALA A:905 , PHE A:960 , HIS A:962 , LEU A:971 , ILE A:980 , ALA A:981 , ASP A:982 , PHE A:983
BINDING SITE FOR RESIDUE MUH A 50
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041861 (P883A, chain A, )
2: VAR_066607 (R915H, chain A, )
3: VAR_066608 (R918C, chain A, )
4: VAR_066609 (V919L, chain A, )
5: VAR_066610 (A925S, chain A, )
6: VAR_066611 (K1100N, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041861
P
883
A
TIE2_HUMAN
Unclassified
---
A
P
883
A
2
UniProt
VAR_066607
R
915
H
TIE2_HUMAN
Disease (VMCM)
---
A
R
915
H
3
UniProt
VAR_066608
R
918
C
TIE2_HUMAN
Disease (VMCM)
---
A
R
918
C
4
UniProt
VAR_066609
V
919
L
TIE2_HUMAN
Disease (VMCM)
---
A
V
919
L
5
UniProt
VAR_066610
A
925
S
TIE2_HUMAN
Disease (VMCM)
---
A
A
925
S
6
UniProt
VAR_066611
K
1100
N
TIE2_HUMAN
Disease (VMCM)
---
A
K
1100
N
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_TYR (A:960-972)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_TYR
PS00109
Tyrosine protein kinases specific active-site signature.
TIE2_HUMAN
960-972
1
A:960-972
[
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]
Exons
(9, 9)
Info
All Exons
Exon 1.15 (A:837-858 (gaps))
Exon 1.16 (A:863-894)
Exon 1.17 (A:899-959)
Exon 1.18 (A:960-997 (gaps))
Exon 1.19 (A:998-1021)
Exon 1.20 (A:1021-1035)
Exon 1.21 (A:1035-1067)
Exon 1.22 (A:1067-1100)
Exon 1.23e (A:1101-1116)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.14b/1.15
02: Boundary 1.15/1.16
03: Boundary 1.16/1.17
04: Boundary 1.17/1.18
05: Boundary 1.18/1.19
06: Boundary 1.19/1.20
07: Boundary 1.20/1.21
08: Boundary 1.21/1.22
09: Boundary 1.22/1.23e
10: Boundary 1.23e/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000380036
1b
ENSE00001483540
chr9:
27109147-27109640
494
TIE2_HUMAN
1-18
18
0
-
-
1.2
ENST00000380036
2
ENSE00001374032
chr9:
27157829-27158140
312
TIE2_HUMAN
18-122
105
0
-
-
1.3
ENST00000380036
3
ENSE00000813529
chr9:
27168493-27168603
111
TIE2_HUMAN
122-159
38
0
-
-
1.4a
ENST00000380036
4a
ENSE00000813530
chr9:
27169475-27169627
153
TIE2_HUMAN
159-210
52
0
-
-
1.5
ENST00000380036
5
ENSE00000813531
chr9:
27172614-27172745
132
TIE2_HUMAN
210-254
45
0
-
-
1.6
ENST00000380036
6
ENSE00000813532
chr9:
27173220-27173360
141
TIE2_HUMAN
254-301
48
0
-
-
1.7a
ENST00000380036
7a
ENSE00000813533
chr9:
27180238-27180366
129
TIE2_HUMAN
301-344
44
0
-
-
1.8
ENST00000380036
8
ENSE00001749181
chr9:
27183457-27183608
152
TIE2_HUMAN
344-394
51
0
-
-
1.9
ENST00000380036
9
ENSE00001621905
chr9:
27185483-27185627
145
TIE2_HUMAN
395-443
49
0
-
-
1.10
ENST00000380036
10
ENSE00001614493
chr9:
27190527-27190688
162
TIE2_HUMAN
443-497
55
0
-
-
1.11
ENST00000380036
11
ENSE00001750035
chr9:
27192487-27192621
135
TIE2_HUMAN
497-542
46
0
-
-
1.12
ENST00000380036
12
ENSE00001637869
chr9:
27197313-27197597
285
TIE2_HUMAN
542-637
96
0
-
-
1.13b
ENST00000380036
13b
ENSE00001711672
chr9:
27202818-27203117
300
TIE2_HUMAN
637-737
101
0
-
-
1.14b
ENST00000380036
14b
ENSE00001748389
chr9:
27204909-27205063
155
TIE2_HUMAN
737-788
52
0
-
-
1.15
ENST00000380036
15
ENSE00001695490
chr9:
27206580-27206790
211
TIE2_HUMAN
789-859
71
1
A:837-858 (gaps)
22
1.16
ENST00000380036
16
ENSE00001621003
chr9:
27209119-27209229
111
TIE2_HUMAN
859-896
38
1
A:863-894
32
1.17
ENST00000380036
17
ENSE00001797382
chr9:
27212705-27212895
191
TIE2_HUMAN
896-959
64
1
A:899-959
61
1.18
ENST00000380036
18
ENSE00001617075
chr9:
27213482-27213595
114
TIE2_HUMAN
960-997
38
1
A:960-997 (gaps)
38
1.19
ENST00000380036
19
ENSE00001635180
chr9:
27217686-27217756
71
TIE2_HUMAN
998-1021
24
1
A:998-1021
24
1.20
ENST00000380036
20
ENSE00001599995
chr9:
27218775-27218815
41
TIE2_HUMAN
1021-1035
15
1
A:1021-1035
15
1.21
ENST00000380036
21
ENSE00001720679
chr9:
27220047-27220143
97
TIE2_HUMAN
1035-1067
33
1
A:1035-1067
33
1.22
ENST00000380036
22
ENSE00001712731
chr9:
27228204-27228303
100
TIE2_HUMAN
1067-1100
34
1
A:1067-1100
34
1.23e
ENST00000380036
23e
ENSE00001838203
chr9:
27229156-27230173
1018
TIE2_HUMAN
1101-1124
24
1
A:1101-1116
16
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2osca_ (A:)
View:
Select:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
automated matches
(542)
Human (Homo sapiens) [TaxId: 9606]
(452)
1a
d2osca_
A:
[
close SCOP info
]
CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_2oscA01 (A:837-907)
2a: CATH_2oscA02 (A:908-1116)
View:
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Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2oscA01
A:837-907
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2oscA02
A:908-1116
[
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]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pkinase_Tyr_2oscA01 (A:837-1092)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase_Tyr
(229)
Homo sapiens (Human)
(202)
1a
Pkinase_Tyr-2oscA01
A:837-1092
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