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Getting 'Exon' information from database.
2ORX
Asym. Unit
Info
Asym.Unit (60 KB)
Biol.Unit 1 (55 KB)
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(1)
Title
:
STRUCTURAL BASIS FOR LIGAND BINDING AND HEPARIN MEDIATED ACTIVATION OF NEUROPILIN
Authors
:
C. W. Vander Kooi, M. A. Jusino, B. Perman, D. B. Neau, H. D. Bellamy, D. J
Date
:
05 Feb 07 (Deposition) - 03 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Neuropilin, Vegf, Tuftsin, Signaling Protein, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. W. Vander Kooi, M. A. Jusino, B. Perman, D. B. Neau, H. D. Bellamy, D. J. Leahy
Structural Basis For Ligand And Heparin Binding To Neuropilin B Domains
Proc. Natl. Acad. Sci. Usa V. 104 6152 2007
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(3, 6)
Info
All PROSITE Patterns/Profiles
1: FA58C_3 (A:275-424|A:431-583)
2: FA58C_1 (A:314-343|A:470-502)
3: FA58C_2 (A:408-424|A:566-583)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
FA58C_3
PS50022
Coagulation factors 5/8 type C domain (FA58C) profile.
NRP1_RAT
275-424
431-583
2
A:275-424
A:431-583
2
FA58C_1
PS01285
Coagulation factors 5/8 type C domain (FA58C) signature 1.
NRP1_RAT
314-343
470-502
2
A:314-343
A:470-502
3
FA58C_2
PS01286
Coagulation factors 5/8 type C domain (FA58C) signature 2.
NRP1_RAT
408-424
566-583
2
A:408-424
A:566-583
[
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Exons
(5, 5)
Info
All Exons
Exon 1.7 (A:273-327)
Exon 1.8 (A:328-379)
Exon 1.9 (A:380-428)
Exon 1.10 (A:428-538)
Exon 1.11 (A:539-586)
View:
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All Exon Boundaries
1: Boundary 1.6/1.7
2: Boundary 1.7/1.8
3: Boundary 1.8/1.9
4: Boundary 1.9/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000014492
1
ENSRNOE00000327489
chr19:
58332004-58332081
78
NRP1_RAT
-
0
0
-
-
1.2
ENSRNOT00000014492
2
ENSRNOE00000220561
chr19:
58333819-58334353
535
NRP1_RAT
1-25
25
0
-
-
1.3
ENSRNOT00000014492
3
ENSRNOE00000102082
chr19:
58337959-58338133
175
NRP1_RAT
25-83
59
0
-
-
1.4
ENSRNOT00000014492
4
ENSRNOE00000101380
chr19:
58395175-58395356
182
NRP1_RAT
83-144
62
0
-
-
1.5
ENSRNOT00000014492
5
ENSRNOE00000101424
chr19:
58402081-58402308
228
NRP1_RAT
144-220
77
0
-
-
1.6
ENSRNOT00000014492
6
ENSRNOE00000101477
chr19:
58408363-58408518
156
NRP1_RAT
220-272
53
0
-
-
1.7
ENSRNOT00000014492
7
ENSRNOE00000102140
chr19:
58410608-58410774
167
NRP1_RAT
272-327
56
1
A:273-327
55
1.8
ENSRNOT00000014492
8
ENSRNOE00000102187
chr19:
58441293-58441448
156
NRP1_RAT
328-379
52
1
A:328-379
52
1.9
ENSRNOT00000014492
9
ENSRNOE00000101620
chr19:
58444926-58445070
145
NRP1_RAT
380-428
49
1
A:380-428
49
1.10
ENSRNOT00000014492
10
ENSRNOE00000101661
chr19:
58453043-58453374
332
NRP1_RAT
428-538
111
1
A:428-538
111
1.11
ENSRNOT00000014492
11
ENSRNOE00000102243
chr19:
58460560-58460704
145
NRP1_RAT
539-587
49
1
A:539-586
48
1.12
ENSRNOT00000014492
12
ENSRNOE00000102302
chr19:
58464604-58464708
105
NRP1_RAT
587-622
36
0
-
-
1.13
ENSRNOT00000014492
13
ENSRNOE00000102345
chr19:
58471240-58471299
60
NRP1_RAT
622-642
21
0
-
-
1.14
ENSRNOT00000014492
14
ENSRNOE00000102411
chr19:
58476649-58476786
138
NRP1_RAT
642-688
47
0
-
-
1.15
ENSRNOT00000014492
15
ENSRNOE00000102468
chr19:
58482042-58482313
272
NRP1_RAT
688-778
91
0
-
-
1.16
ENSRNOT00000014492
16
ENSRNOE00000102524
chr19:
58482746-58482842
97
NRP1_RAT
779-811
33
0
-
-
1.17
ENSRNOT00000014492
17
ENSRNOE00000102578
chr19:
58484904-58484954
51
NRP1_RAT
811-828
18
0
-
-
1.18
ENSRNOT00000014492
18
ENSRNOE00000220548
chr19:
58486868-58487681
814
NRP1_RAT
828-922
95
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2orxa1 (A:273-426)
1b: SCOP_d2orxa2 (A:427-586)
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Protein Domains
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)
(
)
Organisms
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(
)
Class
:
All beta proteins
(24004)
Fold
:
Galactose-binding domain-like
(314)
Superfamily
:
Galactose-binding domain-like
(314)
Family
:
Discoidin domain (FA58C, coagulation factor 5/8 C-terminal domain)
(17)
Protein domain
:
B1 domain of neuropilin-1
(2)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(1)
1a
d2orxa1
A:273-426
1b
d2orxa2
A:427-586
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2orxA02 (A:428-586)
1b: CATH_2orxA01 (A:273-427)
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)
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)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Jelly Rolls
(1293)
Homologous Superfamily
:
Galactose-binding domain-like
(195)
Norway rat (Rattus norvegicus)
(2)
1a
2orxA02
A:428-586
1b
2orxA01
A:273-427
[
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]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_F5_F8_type_C_2orxA01 (A:446-580)
1b: PFAM_F5_F8_type_C_2orxA02 (A:446-580)
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Organisms
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)
Clan
:
GBD
(153)
Family
:
F5_F8_type_C
(45)
Rattus norvegicus (Rat)
(2)
1a
F5_F8_type_C-2orxA01
A:446-580
1b
F5_F8_type_C-2orxA02
A:446-580
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Chain A
Asymmetric Unit 1
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