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2OQY
Asym. Unit
Info
Asym.Unit (499 KB)
Biol.Unit 1 (492 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF MUCONATE CYCLOISOMERASE FROM OCEANOBACILLUS IHEYENSIS
Authors
:
A. A. Fedorov, R. Toro, E. V. Fedorov, J. Bonanno, J. M. Sauder, S. K. Burley, J. A. Gerlt, S. C. Almo, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date
:
01 Feb 07 (Deposition) - 06 Mar 07 (Release) - 22 Dec 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D,E,F,G,H (1x)
Keywords
:
Enolase Superfamily, Structural Genomics, Target 9375A, Nysgrc, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Isomerase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. F. Rakus, C. Kalyanaraman, A. A. Fedorov, E. V. Fedorov, F. P. Mills-Groninger, R. Toro, J. Bonanno, K. Bain, J. M. Sauder, S. K. Burley, S. C. Almo, M. P. Jacobson, J. A. Gerlt
Computation-Facilitated Assignment Of The Function In The Enolase Superfamily: A Regiochemically Distinct Galactarate Dehydratase From Oceanobacillus Iheyensis .
Biochemistry V. 48 11546 2009
(for further references see the
PDB file header
)
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Hetero Components
(1, 16)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
1c: MAGNESIUM ION (MGc)
1d: MAGNESIUM ION (MGd)
1e: MAGNESIUM ION (MGe)
1f: MAGNESIUM ION (MGf)
1g: MAGNESIUM ION (MGg)
1h: MAGNESIUM ION (MGh)
1i: MAGNESIUM ION (MGi)
1j: MAGNESIUM ION (MGj)
1k: MAGNESIUM ION (MGk)
1l: MAGNESIUM ION (MGl)
1m: MAGNESIUM ION (MGm)
1n: MAGNESIUM ION (MGn)
1o: MAGNESIUM ION (MGo)
1p: MAGNESIUM ION (MGp)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
16
Ligand/Ion
MAGNESIUM ION
[
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Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:193 , GLU A:221 , HIS A:246 , HOH A:479 , HOH A:480 , HOH A:481
BINDING SITE FOR RESIDUE MG A 401
02
AC2
SOFTWARE
ASP A:42 , HIS A:45 , THR A:297
BINDING SITE FOR RESIDUE MG A 402
03
AC3
SOFTWARE
ASP B:193 , GLU B:221 , HIS B:246 , HOH B:475 , HOH B:476 , HOH B:477
BINDING SITE FOR RESIDUE MG B 401
04
AC4
SOFTWARE
ASP B:42 , HIS B:45 , THR B:297 , HOH B:470
BINDING SITE FOR RESIDUE MG B 402
05
AC5
SOFTWARE
ASP C:193 , GLU C:221 , HIS C:246 , HOH C:472 , HOH C:473 , HOH C:474
BINDING SITE FOR RESIDUE MG C 401
06
AC6
SOFTWARE
ASP C:42 , HIS C:45 , THR C:297
BINDING SITE FOR RESIDUE MG C 402
07
AC7
SOFTWARE
ASP D:193 , GLU D:221 , HIS D:246 , HOH D:478 , HOH D:479 , HOH D:480
BINDING SITE FOR RESIDUE MG D 401
08
AC8
SOFTWARE
ASP D:42 , HIS D:45 , THR D:297
BINDING SITE FOR RESIDUE MG D 402
09
AC9
SOFTWARE
ASP E:193 , GLU E:221 , HIS E:246 , HOH E:481 , HOH E:482 , HOH E:483
BINDING SITE FOR RESIDUE MG E 401
10
BC1
SOFTWARE
ASP E:42 , HIS E:45 , THR E:297
BINDING SITE FOR RESIDUE MG E 402
11
BC2
SOFTWARE
ASP F:193 , GLU F:221 , HIS F:246 , HOH F:478 , HOH F:479 , HOH F:480
BINDING SITE FOR RESIDUE MG F 401
12
BC3
SOFTWARE
ASP F:42 , HIS F:45 , THR F:297
BINDING SITE FOR RESIDUE MG F 402
13
BC4
SOFTWARE
ASP G:193 , GLU G:221 , HIS G:246 , HOH G:480 , HOH G:481 , HOH G:482
BINDING SITE FOR RESIDUE MG G 401
14
BC5
SOFTWARE
ASP G:42 , HIS G:45 , THR G:297
BINDING SITE FOR RESIDUE MG G 402
15
BC6
SOFTWARE
ASP H:193 , GLU H:221 , HIS H:246 , HOH H:483 , HOH H:484 , HOH H:485
BINDING SITE FOR RESIDUE MG H 401
16
BC7
SOFTWARE
ASP H:42 , HIS H:45 , THR H:297
BINDING SITE FOR RESIDUE MG H 402
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 16)
Info
All SCOP Domains
1a: SCOP_d2oqya1 (A:1-122)
1b: SCOP_d2oqyb1 (B:1-122)
1c: SCOP_d2oqyc1 (C:1-122)
1d: SCOP_d2oqyd1 (D:1-122)
1e: SCOP_d2oqye1 (E:1-122)
1f: SCOP_d2oqyf1 (F:1-122)
1g: SCOP_d2oqyg1 (G:1-122)
1h: SCOP_d2oqyh1 (H:1-122)
2a: SCOP_d2oqya2 (A:123-374)
2b: SCOP_d2oqyb2 (B:123-374)
2c: SCOP_d2oqyc2 (C:123-374)
2d: SCOP_d2oqyd2 (D:123-374)
2e: SCOP_d2oqye2 (E:123-374)
2f: SCOP_d2oqyf2 (F:123-374)
2g: SCOP_d2oqyg2 (G:123-374)
2h: SCOP_d2oqyh2 (H:123-374)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Enolase N-terminal domain-like
(211)
Superfamily
:
Enolase N-terminal domain-like
(211)
Family
:
automated matches
(123)
Protein domain
:
automated matches
(123)
Oceanobacillus iheyensis [TaxId: 182710]
(1)
1a
d2oqya1
A:1-122
1b
d2oqyb1
B:1-122
1c
d2oqyc1
C:1-122
1d
d2oqyd1
D:1-122
1e
d2oqye1
E:1-122
1f
d2oqyf1
F:1-122
1g
d2oqyg1
G:1-122
1h
d2oqyh1
H:1-122
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Enolase C-terminal domain-like
(212)
Family
:
automated matches
(102)
Protein domain
:
automated matches
(102)
Oceanobacillus iheyensis [TaxId: 182710]
(1)
2a
d2oqya2
A:123-374
2b
d2oqyb2
B:123-374
2c
d2oqyc2
C:123-374
2d
d2oqyd2
D:123-374
2e
d2oqye2
E:123-374
2f
d2oqyf2
F:123-374
2g
d2oqyg2
G:123-374
2h
d2oqyh2
H:123-374
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2oqyA01 (A:1-122,A:349-368)
1b: CATH_2oqyB01 (B:1-122,B:349-368)
1c: CATH_2oqyC01 (C:1-122,C:349-368)
1d: CATH_2oqyD01 (D:1-122,D:349-368)
1e: CATH_2oqyE01 (E:1-122,E:349-368)
1f: CATH_2oqyF01 (F:1-122,F:349-368)
1g: CATH_2oqyG01 (G:1-122,G:349-368)
1h: CATH_2oqyH01 (H:1-122,H:349-368)
2a: CATH_2oqyA02 (A:123-348)
2b: CATH_2oqyB02 (B:123-348)
2c: CATH_2oqyC02 (C:123-348)
2d: CATH_2oqyD02 (D:123-348)
2e: CATH_2oqyE02 (E:123-348)
2f: CATH_2oqyF02 (F:123-348)
2g: CATH_2oqyG02 (G:123-348)
2h: CATH_2oqyH02 (H:123-348)
View:
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)
(
)
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
Enolase-like, N-terminal domain
(130)
Oceanobacillus iheyensis. Organism_taxid: 182710. Strain: dsm 14371, jcm 11309, kctc 3954, hte831.
(1)
1a
2oqyA01
A:1-122,A:349-368
1b
2oqyB01
B:1-122,B:349-368
1c
2oqyC01
C:1-122,C:349-368
1d
2oqyD01
D:1-122,D:349-368
1e
2oqyE01
E:1-122,E:349-368
1f
2oqyF01
F:1-122,F:349-368
1g
2oqyG01
G:1-122,G:349-368
1h
2oqyH01
H:1-122,H:349-368
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Enolase superfamily
(142)
Oceanobacillus iheyensis. Organism_taxid: 182710. Strain: dsm 14371, jcm 11309, kctc 3954, hte831.
(1)
2a
2oqyA02
A:123-348
2b
2oqyB02
B:123-348
2c
2oqyC02
C:123-348
2d
2oqyD02
D:123-348
2e
2oqyE02
E:123-348
2f
2oqyF02
F:123-348
2g
2oqyG02
G:123-348
2h
2oqyH02
H:123-348
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Pfam Domains
(0, 0)
Info
all PFAM domains
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