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Asym. Unit
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Asym.Unit (179 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (87 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF YEAST PAPS REDUCTASE WITH PAP, A PRODUCT COMPLEX
Authors
:
Z. Yu, A. J. Fisher
Date
:
31 Jan 07 (Deposition) - 15 Jan 08 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Sulfate Reduction, Paps Reductase, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Z. Yu, D. Lemongello, I. H. Segel, A. J. Fisher
Crystal Structure Of Saccharomyces Cerevisiae 3'-Phosphoadenosine-5'-Phosphosulfate Reductase Complexed With Adenosine 3', 5'-Bisphosphate.
Biochemistry V. 47 12777 2008
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Hetero Components
(1, 4)
Info
All Hetero Components
1a: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pa)
1b: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pb)
1c: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pc)
1d: ADENOSINE-3'-5'-DIPHOSPHATE (A3Pd)
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No.
Name
Count
Type
Full Name
1
A3P
4
Ligand/Ion
ADENOSINE-3'-5'-DIPHOSPHATE
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:47 , THR A:48 , ALA A:49 , PHE A:50 , GLY A:51 , GLY A:54 , ILE A:76 , LYS A:139 , THR A:157 , GLY A:158 , ARG A:167 , ARG A:236 , ILE A:247 , HIS A:248 , HOH A:1008 , HOH A:1018 , HOH A:1024 , HOH A:1025 , HOH A:1034 , HOH A:1039 , HOH A:1071
BINDING SITE FOR RESIDUE A3P A 999
2
AC2
SOFTWARE
THR B:47 , THR B:48 , ALA B:49 , PHE B:50 , GLY B:51 , GLY B:54 , ILE B:76 , THR B:157 , GLY B:158 , ARG B:159 , ARG B:167 , ARG B:233 , ARG B:236 , HIS B:248 , HOH B:1010 , HOH B:1028 , HOH B:1031
BINDING SITE FOR RESIDUE A3P B 999
3
AC3
SOFTWARE
THR C:47 , THR C:48 , ALA C:49 , PHE C:50 , GLY C:51 , GLY C:54 , ILE C:76 , THR C:157 , GLY C:158 , ARG C:167 , ARG C:236 , ILE C:247 , HIS C:248 , HOH C:1004 , HOH C:1034 , HOH C:1039 , HOH C:1050 , HOH C:1092 , HOH C:1097 , HOH C:1127 , HOH C:1139
BINDING SITE FOR RESIDUE A3P C 999
4
AC4
SOFTWARE
THR D:47 , THR D:48 , ALA D:49 , PHE D:50 , GLY D:51 , GLY D:54 , LEU D:74 , ILE D:76 , THR D:157 , GLY D:158 , ARG D:167 , ARG D:236 , HIS D:248 , HOH D:1000 , HOH D:1010
BINDING SITE FOR RESIDUE A3P D 999
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
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Exons
(1, 4)
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Exon 1.1 (A:1-256 (gaps) | B:1-259 (gaps) | ...)
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1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
YPR167C
1
YPR167C.1
XVI:877628-876843
786
MET16_YEAST
1-261
261
4
A:1-256 (gaps)
B:1-259 (gaps)
C:1-257
D:1-253 (gaps)
256
259
257
253
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SCOP Domains
(0, 0)
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_PAPS_reduct_2oq2D01 (D:43-225)
1b: PFAM_PAPS_reduct_2oq2D02 (D:43-225)
1c: PFAM_PAPS_reduct_2oq2D03 (D:43-225)
1d: PFAM_PAPS_reduct_2oq2D04 (D:43-225)
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Clan
:
HUP
(230)
Family
:
PAPS_reduct
(5)
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast)
(2)
1a
PAPS_reduct-2oq2D01
D:43-225
1b
PAPS_reduct-2oq2D02
D:43-225
1c
PAPS_reduct-2oq2D03
D:43-225
1d
PAPS_reduct-2oq2D04
D:43-225
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Show PDB file:
Asym.Unit (179 KB)
Header - Asym.Unit
Biol.Unit 1 (86 KB)
Header - Biol.Unit 1
Biol.Unit 2 (87 KB)
Header - Biol.Unit 2
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