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Getting 'Exon' information from database.
2OO4
Asym. Unit
Info
Asym.Unit (161 KB)
Biol.Unit 1 (77 KB)
Biol.Unit 2 (76 KB)
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(1)
Title
:
STRUCTURE OF LNR-HD (NEGATIVE REGULATORY REGION) FROM HUMAN NOTCH 2
Authors
:
W. R. Gordon, D. Vardar-Ulu, G. Histen, C. Sanchez-Irizarry, J. C. Aste S. C. Blacklow
Date
:
25 Jan 07 (Deposition) - 03 Apr 07 (Release) - 08 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Alpha-Beta-Sandwich; Sea Domain; Lnr; Lin12 Notch Repeat; Cysteine- Rich; Hd Domain, Cell Cycle, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. R. Gordon, D. Vardar-Ulu, G. Histen, C. Sanchez-Irizarry, J. C. Aster, S. C. Blacklow
Structural Basis For Autoinhibition Of Notch
Nat. Struct. Mol. Biol. V. 14 295 2007
[
close entry info
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
1b: CALCIUM ION (CAb)
1c: CALCIUM ION (CAc)
1d: CALCIUM ION (CAd)
1e: CALCIUM ION (CAe)
1f: CALCIUM ION (CAf)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
6
Ligand/Ion
CALCIUM ION
2
GOL
10
Ligand/Ion
GLYCEROL
3
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:1433 , ASP A:1436 , VAL A:1438 , ASP A:1440 , ASP A:1451 , ASP A:1454
BINDING SITE FOR RESIDUE CA A 5001
02
AC2
SOFTWARE
TYR A:1475 , ASN A:1477 , GLN A:1479 , ASP A:1481 , ASP A:1492 , GLU A:1495
BINDING SITE FOR RESIDUE CA A 5002
03
AC3
SOFTWARE
HIS A:1512 , ASP A:1515 , HIS A:1517 , ASN A:1519 , ASP A:1530 , ASP A:1533
BINDING SITE FOR RESIDUE CA A 5003
04
AC4
SOFTWARE
ASP B:1436 , VAL B:1438 , ASP B:1440 , ASP B:1451 , ASP B:1454
BINDING SITE FOR RESIDUE CA B 5004
05
AC5
SOFTWARE
TYR B:1475 , ASN B:1477 , GLN B:1479 , ASP B:1481 , ASP B:1492 , GLU B:1495
BINDING SITE FOR RESIDUE CA B 5005
06
AC6
SOFTWARE
HIS B:1512 , ASP B:1515 , HIS B:1517 , ASN B:1519 , ASP B:1530 , ASP B:1533
BINDING SITE FOR RESIDUE CA B 5006
07
AC7
SOFTWARE
HOH A:42 , GLU A:1525 , HIS A:1574 , HIS A:1638
BINDING SITE FOR RESIDUE ZN A 6001
08
AC8
SOFTWARE
HOH A:47 , HOH A:173 , GLU A:1586 , LEU A:1587 , TYR A:1590 , HOH B:25 , LYS B:1622
BINDING SITE FOR RESIDUE GOL A 7001
09
AC9
SOFTWARE
SER A:1468 , PRO A:1469 , TRP A:1473 , LEU A:1559 , GLN A:1560
BINDING SITE FOR RESIDUE GOL A 7002
10
BC1
SOFTWARE
HOH A:66 , ASN A:1523 , GLN A:1631 , ASP A:1635
BINDING SITE FOR RESIDUE GOL A 7003
11
BC2
SOFTWARE
GLN A:1538 , GLN A:1634 , GLU B:1556 , LEU B:1559 , GLN B:1560
BINDING SITE FOR RESIDUE GOL B 7004
12
BC3
SOFTWARE
HOH B:142 , HIS B:1446 , ALA B:1447 , TRP B:1473 , ASP B:1474
BINDING SITE FOR RESIDUE GOL B 7005
13
BC4
SOFTWARE
ARG A:1581
BINDING SITE FOR RESIDUE GOL A 7006
14
BC5
SOFTWARE
HOH A:1 , HOH A:44 , PHE A:1513 , GLY A:1528 , GLY A:1531 , LEU A:1566 , ARG A:1567 , THR A:1575 , ASN A:1576 , LEU A:1577
BINDING SITE FOR RESIDUE GOL A 7007
15
BC6
SOFTWARE
HOH A:3 , LYS A:1514 , ARG A:1581
BINDING SITE FOR RESIDUE GOL A 7008
16
BC7
SOFTWARE
HOH A:145 , ASP A:1637
BINDING SITE FOR RESIDUE GOL A 7009
17
BC8
SOFTWARE
ASP A:1432 , ALA A:1434
BINDING SITE FOR RESIDUE GOL A 7010
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_031463 (V1667F, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_031463
V
1667
F
NOTC2_HUMAN
Polymorphism
17024517
A/B
V
1667
F
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 6)
Info
All PROSITE Patterns/Profiles
1: LNR (A:1425-1465,B:1425-1465|A:1503-154...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LNR
PS50258
LNR (Lin-12/Notch) repeat profile.
NOTC2_HUMAN
1425-1465
1503-1544
1466-1502
6
A:1425-1465
B:1425-1465
A:1503-1544
B:1503-1544
A:1466-1502
B:1466-1502
[
close PROSITE info
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Exons
(4, 8)
Info
All Exons
Exon 1.26 (A:1425-1504 | B:1425-1504)
Exon 1.27a (A:1504-1620 (gaps) | B:1504-1620 (...)
Exon 1.28a (A:1620-1668 | B:1620-1668)
Exon 1.29 (A:1668-1672 | B:1668-1672)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.25/1.26
2: Boundary 1.26/1.27a
3: Boundary 1.27a/1.28a
4: Boundary 1.28a/1.29
5: Boundary 1.29/1.30
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000256646
1c
ENSE00001885549
chr1:
120612240-120611948
293
NOTC2_HUMAN
1-25
25
0
-
-
1.2a
ENST00000256646
2a
ENSE00001789051
chr1:
120572610-120572529
82
NOTC2_HUMAN
25-52
28
0
-
-
1.3a
ENST00000256646
3a
ENSE00001600065
chr1:
120548211-120547952
260
NOTC2_HUMAN
52-139
88
0
-
-
1.4
ENST00000256646
4
ENSE00001613149
chr1:
120539955-120539620
336
NOTC2_HUMAN
139-251
113
0
-
-
1.6
ENST00000256646
6
ENSE00000913325
chr1:
120529705-120529583
123
NOTC2_HUMAN
251-292
42
0
-
-
1.7
ENST00000256646
7
ENSE00000913326
chr1:
120512367-120512134
234
NOTC2_HUMAN
292-370
79
0
-
-
1.8
ENST00000256646
8
ENSE00000913327
chr1:
120510855-120510700
156
NOTC2_HUMAN
370-422
53
0
-
-
1.9
ENST00000256646
9
ENSE00000913328
chr1:
120510244-120510056
189
NOTC2_HUMAN
422-485
64
0
-
-
1.10
ENST00000256646
10
ENSE00000913329
chr1:
120509112-120508999
114
NOTC2_HUMAN
485-523
39
0
-
-
1.11
ENST00000256646
11
ENSE00000913330
chr1:
120508189-120508076
114
NOTC2_HUMAN
523-561
39
0
-
-
1.12
ENST00000256646
12
ENSE00000913331
chr1:
120506430-120506197
234
NOTC2_HUMAN
561-639
79
0
-
-
1.13
ENST00000256646
13
ENSE00000913332
chr1:
120502125-120502015
111
NOTC2_HUMAN
639-676
38
0
-
-
1.14
ENST00000256646
14
ENSE00000913333
chr1:
120497855-120497663
193
NOTC2_HUMAN
676-740
65
0
-
-
1.15
ENST00000256646
15
ENSE00000913334
chr1:
120496311-120496166
146
NOTC2_HUMAN
740-789
50
0
-
-
1.16a
ENST00000256646
16a
ENSE00000913335
chr1:
120493460-120493347
114
NOTC2_HUMAN
789-827
39
0
-
-
1.17
ENST00000256646
17
ENSE00000913336
chr1:
120491749-120491630
120
NOTC2_HUMAN
827-867
41
0
-
-
1.18
ENST00000256646
18
ENSE00001073396
chr1:
120491189-120491037
153
NOTC2_HUMAN
867-918
52
0
-
-
1.19
ENST00000256646
19
ENSE00001022881
chr1:
120484377-120484149
229
NOTC2_HUMAN
918-994
77
0
-
-
1.20
ENST00000256646
20
ENSE00000913339
chr1:
120483379-120483178
202
NOTC2_HUMAN
994-1061
68
0
-
-
1.21
ENST00000256646
21
ENSE00000913340
chr1:
120480633-120480480
154
NOTC2_HUMAN
1062-1113
52
0
-
-
1.22a
ENST00000256646
22a
ENSE00000913341
chr1:
120480089-120479905
185
NOTC2_HUMAN
1113-1174
62
0
-
-
1.23a
ENST00000256646
23a
ENSE00000913342
chr1:
120478227-120478095
133
NOTC2_HUMAN
1175-1219
45
0
-
-
1.24
ENST00000256646
24
ENSE00000957931
chr1:
120471835-120471599
237
NOTC2_HUMAN
1219-1298
80
0
-
-
1.25
ENST00000256646
25
ENSE00000913344
chr1:
120469234-120469122
113
NOTC2_HUMAN
1298-1335
38
0
-
-
1.26
ENST00000256646
26
ENSE00000913345
chr1:
120468433-120467928
506
NOTC2_HUMAN
1336-1504
169
2
A:1425-1504
B:1425-1504
80
80
1.27a
ENST00000256646
27a
ENSE00000913346
chr1:
120466607-120466260
348
NOTC2_HUMAN
1504-1620
117
2
A:1504-1620 (gaps)
B:1504-1620 (gaps)
117
117
1.28a
ENST00000256646
28a
ENSE00000913347
chr1:
120465401-120465259
143
NOTC2_HUMAN
1620-1668
49
2
A:1620-1668
B:1620-1668
49
49
1.29
ENST00000256646
29
ENSE00000913348
chr1:
120465069-120464859
211
NOTC2_HUMAN
1668-1738
71
2
A:1668-1672
B:1668-1672
5
5
1.30
ENST00000256646
30
ENSE00000913349
chr1:
120464432-120464336
97
NOTC2_HUMAN
1738-1770
33
0
-
-
1.31
ENST00000256646
31
ENSE00000913350
chr1:
120463020-120462852
169
NOTC2_HUMAN
1771-1827
57
0
-
-
1.32
ENST00000256646
32
ENSE00000913351
chr1:
120462236-120461935
302
NOTC2_HUMAN
1827-1927
101
0
-
-
1.33
ENST00000256646
33
ENSE00000913352
chr1:
120461176-120461029
148
NOTC2_HUMAN
1928-1977
50
0
-
-
1.34
ENST00000256646
34
ENSE00000913353
chr1:
120460385-120460288
98
NOTC2_HUMAN
1977-2009
33
0
-
-
1.35
ENST00000256646
35
ENSE00001123152
chr1:
120459317-120454176
5142
NOTC2_HUMAN
2010-2471
462
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
Select:
Label:
Sorry, no Info available
[
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(3, 10)
Info
all PFAM domains
1a: PFAM_NODP_2oo4B01 (B:1617-1672)
1b: PFAM_NODP_2oo4B02 (B:1617-1672)
2a: PFAM_NOD_2oo4B03 (B:1539-1594)
2b: PFAM_NOD_2oo4B04 (B:1539-1594)
3a: PFAM_Notch_2oo4B05 (B:1498-1535)
3b: PFAM_Notch_2oo4B06 (B:1498-1535)
3c: PFAM_Notch_2oo4B07 (B:1498-1535)
3d: PFAM_Notch_2oo4B08 (B:1498-1535)
3e: PFAM_Notch_2oo4B09 (B:1498-1535)
3f: PFAM_Notch_2oo4B10 (B:1498-1535)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: NODP]
(2)
Family
:
NODP
(2)
Homo sapiens (Human)
(2)
1a
NODP-2oo4B01
B:1617-1672
1b
NODP-2oo4B02
B:1617-1672
Clan
:
no clan defined [family: NOD]
(2)
Family
:
NOD
(2)
Homo sapiens (Human)
(2)
2a
NOD-2oo4B03
B:1539-1594
2b
NOD-2oo4B04
B:1539-1594
Clan
:
no clan defined [family: Notch]
(3)
Family
:
Notch
(3)
Homo sapiens (Human)
(3)
3a
Notch-2oo4B05
B:1498-1535
3b
Notch-2oo4B06
B:1498-1535
3c
Notch-2oo4B07
B:1498-1535
3d
Notch-2oo4B08
B:1498-1535
3e
Notch-2oo4B09
B:1498-1535
3f
Notch-2oo4B10
B:1498-1535
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Asym.Unit (161 KB)
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