PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
2ONP
Biol. Unit 1
Info
Asym.Unit (687 KB)
Biol.Unit 1 (344 KB)
Biol.Unit 2 (343 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ARG475GLN MUTANT OF HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE, COMPLEXED WITH NAD+
Authors
:
H. N. Larson, T. D. Hurley
Date
:
24 Jan 07 (Deposition) - 06 Mar 07 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Aldh, Nad, Rossmann Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. N. Larson, J. Zhou, Z. Chen, J. S. Stamler, H. Weiner, T. D. Hurley
Structural And Functional Consequences Of Coenzyme Binding To The Inactive Asian Variant Of Mitochondrial Aldehyde Dehydrogenase: Roles Of Residues 475 And 487.
J. Biol. Chem. V. 282 12940 2007
[
close entry info
]
Hetero Components
(3, 38)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GUANIDINE (GAIa)
2aa: GUANIDINE (GAIaa)
2ab: GUANIDINE (GAIab)
2b: GUANIDINE (GAIb)
2c: GUANIDINE (GAIc)
2d: GUANIDINE (GAId)
2e: GUANIDINE (GAIe)
2f: GUANIDINE (GAIf)
2g: GUANIDINE (GAIg)
2h: GUANIDINE (GAIh)
2i: GUANIDINE (GAIi)
2j: GUANIDINE (GAIj)
2k: GUANIDINE (GAIk)
2l: GUANIDINE (GAIl)
2m: GUANIDINE (GAIm)
2n: GUANIDINE (GAIn)
2o: GUANIDINE (GAIo)
2p: GUANIDINE (GAIp)
2q: GUANIDINE (GAIq)
2r: GUANIDINE (GAIr)
2s: GUANIDINE (GAIs)
2t: GUANIDINE (GAIt)
2u: GUANIDINE (GAIu)
2v: GUANIDINE (GAIv)
2w: GUANIDINE (GAIw)
2x: GUANIDINE (GAIx)
2y: GUANIDINE (GAIy)
2z: GUANIDINE (GAIz)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
5d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
5e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
5f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
5g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
5h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
5h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
19
Ligand/Ion
1,2-ETHANEDIOL
2
GAI
15
Ligand/Ion
GUANIDINE
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
NA
-1
Ligand/Ion
SODIUM ION
5
NAD
4
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(49, 49)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC9 (SOFTWARE)
06: BC1 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC8 (SOFTWARE)
10: BC9 (SOFTWARE)
11: CC1 (SOFTWARE)
12: CC2 (SOFTWARE)
13: CC7 (SOFTWARE)
14: CC8 (SOFTWARE)
15: CC9 (SOFTWARE)
16: DC1 (SOFTWARE)
17: DC2 (SOFTWARE)
18: DC3 (SOFTWARE)
19: DC4 (SOFTWARE)
20: DC5 (SOFTWARE)
21: DC6 (SOFTWARE)
22: DC7 (SOFTWARE)
23: DC8 (SOFTWARE)
24: DC9 (SOFTWARE)
25: EC1 (SOFTWARE)
26: EC2 (SOFTWARE)
27: EC3 (SOFTWARE)
28: EC4 (SOFTWARE)
29: EC5 (SOFTWARE)
30: EC6 (SOFTWARE)
31: EC7 (SOFTWARE)
32: FC4 (SOFTWARE)
33: FC9 (SOFTWARE)
34: GC1 (SOFTWARE)
35: HC1 (SOFTWARE)
36: HC2 (SOFTWARE)
37: HC3 (SOFTWARE)
38: HC4 (SOFTWARE)
39: HC5 (SOFTWARE)
40: HC6 (SOFTWARE)
41: HC7 (SOFTWARE)
42: HC8 (SOFTWARE)
43: HC9 (SOFTWARE)
44: IC1 (SOFTWARE)
45: IC2 (SOFTWARE)
46: JC3 (SOFTWARE)
47: JC4 (SOFTWARE)
48: JC5 (SOFTWARE)
49: JC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAD A:501 , HOH A:3300
BINDING SITE FOR RESIDUE MG A 601
02
AC2
SOFTWARE
NAD B:502 , HOH B:3302 , HOH B:3303
BINDING SITE FOR RESIDUE MG B 602
03
AC3
SOFTWARE
NAD C:503 , HOH C:1373 , HOH C:3305 , HOH C:3306
BINDING SITE FOR RESIDUE MG C 603
04
AC4
SOFTWARE
NAD D:504 , HOH D:2967
BINDING SITE FOR RESIDUE MG D 604
05
AC9
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196
BINDING SITE FOR RESIDUE NA A 701
06
BC1
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196 , HOH B:2405
BINDING SITE FOR RESIDUE NA B 702
07
BC2
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:1740 , HOH C:2442
BINDING SITE FOR RESIDUE NA C 703
08
BC3
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:2188 , HOH D:3319
BINDING SITE FOR RESIDUE NA D 704
09
BC8
SOFTWARE
ILE A:165 , ILE A:166 , PRO A:167 , TRP A:168 , ASN A:169 , LYS A:192 , GLU A:195 , GLY A:225 , GLY A:229 , ALA A:230 , PHE A:243 , GLY A:245 , SER A:246 , ILE A:249 , ILE A:253 , LEU A:269 , CYS A:302 , GLN A:349 , GLU A:399 , PHE A:401 , MG A:601 , HOH A:1882 , HOH A:2651 , HOH A:3077 , HOH A:3483
BINDING SITE FOR RESIDUE NAD A 501
10
BC9
SOFTWARE
ILE B:165 , ILE B:166 , PRO B:167 , TRP B:168 , ASN B:169 , LYS B:192 , GLU B:195 , GLN B:196 , GLY B:225 , GLY B:229 , ALA B:230 , PHE B:243 , GLY B:245 , SER B:246 , ILE B:249 , ILE B:253 , GLU B:268 , LEU B:269 , CYS B:302 , GLN B:349 , LYS B:352 , GLU B:399 , PHE B:401 , MG B:602 , HOH B:1512 , HOH B:3173 , HOH B:3302 , HOH B:3303
BINDING SITE FOR RESIDUE NAD B 502
11
CC1
SOFTWARE
ILE C:165 , ILE C:166 , PRO C:167 , TRP C:168 , ASN C:169 , LYS C:192 , GLU C:195 , GLN C:196 , GLY C:225 , PRO C:226 , GLY C:229 , ALA C:230 , PHE C:243 , GLY C:245 , SER C:246 , ILE C:249 , ILE C:253 , GLU C:268 , LEU C:269 , CYS C:302 , GLN C:349 , LYS C:352 , GLU C:399 , PHE C:401 , MG C:603 , HOH C:1102 , HOH C:1503 , HOH C:1710 , HOH C:1825 , HOH C:2260 , HOH C:3306
BINDING SITE FOR RESIDUE NAD C 503
12
CC2
SOFTWARE
ILE D:165 , ILE D:166 , PRO D:167 , TRP D:168 , ASN D:169 , LYS D:192 , GLU D:195 , GLY D:225 , GLY D:229 , ALA D:230 , PHE D:243 , GLY D:245 , SER D:246 , ILE D:249 , ILE D:253 , LEU D:269 , CYS D:302 , GLN D:349 , LYS D:352 , GLU D:399 , PHE D:401 , MG D:604 , HOH D:1443
BINDING SITE FOR RESIDUE NAD D 504
13
CC7
SOFTWARE
TYR A:153 , ARG A:155 , HOH A:3200 , SER B:443 , PHE D:151
BINDING SITE FOR RESIDUE EDO A 6901
14
CC8
SOFTWARE
ASN A:41 , THR A:44 , GLU A:46 , VAL A:47 , ILE A:48
BINDING SITE FOR RESIDUE EDO A 6911
15
CC9
SOFTWARE
PHE A:18 , TYR A:101 , TYR A:203 , HOH A:1743
BINDING SITE FOR RESIDUE EDO A 6921
16
DC1
SOFTWARE
TYR A:441 , GLN A:444 , ALA A:445 , GLN C:497 , HOH C:2484
BINDING SITE FOR RESIDUE EDO A 6941
17
DC2
SOFTWARE
ALA A:68 , HOH A:2742
BINDING SITE FOR RESIDUE EDO A 6951
18
DC3
SOFTWARE
SER A:443 , TYR B:153 , ARG B:155 , PHE C:151
BINDING SITE FOR RESIDUE EDO B 6902
19
DC4
SOFTWARE
ASN B:41 , THR B:44 , LEU B:108
BINDING SITE FOR RESIDUE EDO B 6912
20
DC5
SOFTWARE
TYR B:441 , GLN B:444 , ALA B:445 , HOH B:2904 , GLN D:497
BINDING SITE FOR RESIDUE EDO B 6942
21
DC6
SOFTWARE
ALA B:68 , GLN B:71 , HOH B:3168
BINDING SITE FOR RESIDUE EDO B 6952
22
DC7
SOFTWARE
GLU B:347 , LYS B:351 , HOH F:3398 , EDO F:6956
BINDING SITE FOR RESIDUE EDO B 6962
23
DC8
SOFTWARE
PHE B:151 , TYR C:153 , ARG C:155 , SER D:443
BINDING SITE FOR RESIDUE EDO C 6903
24
DC9
SOFTWARE
ASN C:41 , THR C:44 , GLU C:46 , LEU C:108
BINDING SITE FOR RESIDUE EDO C 6913
25
EC1
SOFTWARE
PHE C:18 , TYR C:101 , TYR C:203 , HOH C:1818
BINDING SITE FOR RESIDUE EDO C 6923
26
EC2
SOFTWARE
GLN A:497 , HOH A:1115 , TYR C:441 , GLN C:444 , ALA C:445 , LEU D:72
BINDING SITE FOR RESIDUE EDO C 6943
27
EC3
SOFTWARE
ALA C:68 , SER C:74 , HOH C:1277 , ILE G:373 , HOH G:3426
BINDING SITE FOR RESIDUE EDO C 6953
28
EC4
SOFTWARE
GLU C:347 , PHE C:350 , GAI C:6823 , GLY F:45
BINDING SITE FOR RESIDUE EDO C 6963
29
EC5
SOFTWARE
PHE A:151 , SER C:443 , TYR D:153 , ARG D:155
BINDING SITE FOR RESIDUE EDO D 6904
30
EC6
SOFTWARE
ASN D:41 , THR D:44 , GLU D:46
BINDING SITE FOR RESIDUE EDO D 6914
31
EC7
SOFTWARE
PHE D:18 , TYR D:101 , TYR D:203 , HOH D:1845
BINDING SITE FOR RESIDUE EDO D 6924
32
FC4
SOFTWARE
HOH D:3326 , GLU E:347 , PHE E:350 , LYS E:351
BINDING SITE FOR RESIDUE EDO E 6965
33
FC9
SOFTWARE
ILE B:373 , EDO B:6962 , ALA F:68 , GLN F:71 , HOH F:1658
BINDING SITE FOR RESIDUE EDO F 6956
34
GC1
SOFTWARE
VAL C:40 , GLY C:45 , HOH C:1657 , GLU F:347 , GAI F:6826
BINDING SITE FOR RESIDUE EDO F 6966
35
HC1
SOFTWARE
GLU A:157 , PRO A:158 , VAL A:159 , HOH A:1423 , HOH A:1773
BINDING SITE FOR RESIDUE GAI A 6801
36
HC2
SOFTWARE
ASP A:147 , PHE A:150 , HOH A:2923 , PHE B:459 , HOH B:2373
BINDING SITE FOR RESIDUE GAI A 6811
37
HC3
SOFTWARE
ILE A:373 , ALA A:375 , ASP A:376 , GLY A:378
BINDING SITE FOR RESIDUE GAI A 6821
38
HC4
SOFTWARE
TYR A:468 , GLU B:157 , PRO B:158 , VAL B:159 , HOH B:1219 , HOH B:2730
BINDING SITE FOR RESIDUE GAI B 6802
39
HC5
SOFTWARE
PHE A:459 , HOH A:2071 , ASP B:147 , PHE B:150
BINDING SITE FOR RESIDUE GAI B 6812
40
HC6
SOFTWARE
GLU C:157 , PRO C:158 , VAL C:159
BINDING SITE FOR RESIDUE GAI C 6803
41
HC7
SOFTWARE
ILE C:146 , ASP C:147 , PHE D:459
BINDING SITE FOR RESIDUE GAI C 6813
42
HC8
SOFTWARE
PHE C:350 , ALA C:375 , ASP C:376 , GLY C:378 , EDO C:6963
BINDING SITE FOR RESIDUE GAI C 6823
43
HC9
SOFTWARE
TYR C:468 , GLU D:157 , PRO D:158 , VAL D:159 , HOH D:1964 , HOH D:2702
BINDING SITE FOR RESIDUE GAI D 6804
44
IC1
SOFTWARE
PHE C:459 , HOH C:1550 , ILE D:146 , ASP D:147 , PHE D:150
BINDING SITE FOR RESIDUE GAI D 6814
45
IC2
SOFTWARE
PHE D:350 , ILE D:373 , ALA D:375 , ASP D:376 , GLY D:378
BINDING SITE FOR RESIDUE GAI D 6824
46
JC3
SOFTWARE
ARG A:264 , GLU A:487 , HOH A:1705 , GLY B:467 , TYR B:468 , LYS B:469 , GLY B:472
BINDING SITE FOR RESIDUE GAI B 6831
47
JC4
SOFTWARE
GLY A:467 , TYR A:468 , LYS A:469 , GLY A:472 , ARG B:264 , GLU B:487 , HOH B:2170
BINDING SITE FOR RESIDUE GAI A 6832
48
JC5
SOFTWARE
ARG C:264 , GLU C:487 , HOH C:2229 , GLY D:467 , TYR D:468 , LYS D:469 , GLY D:472
BINDING SITE FOR RESIDUE GAI D 6833
49
JC6
SOFTWARE
GLY C:467 , TYR C:468 , LYS C:469 , GLY C:472 , ARG D:264 , GLU D:487
BINDING SITE FOR RESIDUE GAI C 6834
[
close Site info
]
SAPs(SNPs)/Variants
(3, 12)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_011869 (E320V, chain A/B/C/D, )
2: VAR_011302 (E479K, chain A/B/C/D, )
3: VAR_002248 (E487K, chain A/B/C/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011869
E
337
V
ALDH2_HUMAN
Polymorphism
1062136
A/B/C/D
E
320
V
2
UniProt
VAR_011302
E
496
K
ALDH2_HUMAN
Polymorphism
---
A/B/C/D
E
479
K
3
UniProt
VAR_002248
E
504
K
ALDH2_HUMAN
Polymorphism
671
A/B/C/D
E
487
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 8)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:267-274,B:267-274,C:267-274,D:26...)
2: ALDEHYDE_DEHYDR_CYS (A:295-306,B:295-306,C:295-306,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ALDH2_HUMAN
284-291
4
A:267-274
B:267-274
C:267-274
D:267-274
-
-
-
-
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ALDH2_HUMAN
312-323
4
A:295-306
B:295-306
C:295-306
D:295-306
-
-
-
-
[
close PROSITE info
]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2onpa_ (A:)
1b: SCOP_d2onpb_ (B:)
1c: SCOP_d2onpc_ (C:)
1d: SCOP_d2onpd_ (D:)
1e: SCOP_d2onpe_ (E:)
1f: SCOP_d2onpf_ (F:)
1g: SCOP_d2onpg_ (G:)
1h: SCOP_d2onph_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d2onpa_
A:
1b
d2onpb_
B:
1c
d2onpc_
C:
1d
d2onpd_
D:
1e
d2onpe_
E:
1f
d2onpf_
F:
1g
d2onpg_
G:
1h
d2onph_
H:
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2onpA01 (A:8-270,A:461-500)
1b: CATH_2onpB01 (B:8-270,B:461-500)
1c: CATH_2onpC01 (C:8-270,C:461-500)
1d: CATH_2onpD01 (D:8-270,D:461-500)
1e: CATH_2onpE01 (E:8-270,E:461-500)
1f: CATH_2onpF01 (F:8-270,F:461-500)
1g: CATH_2onpG01 (G:8-270,G:461-500)
1h: CATH_2onpH01 (H:8-270,H:461-500)
2a: CATH_2onpA02 (A:271-460)
2b: CATH_2onpB02 (B:271-460)
2c: CATH_2onpC02 (C:271-460)
2d: CATH_2onpD02 (D:271-460)
2e: CATH_2onpE02 (E:271-460)
2f: CATH_2onpF02 (F:271-460)
2g: CATH_2onpG02 (G:271-460)
2h: CATH_2onpH02 (H:271-460)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Human (Homo sapiens)
(22)
1a
2onpA01
A:8-270,A:461-500
1b
2onpB01
B:8-270,B:461-500
1c
2onpC01
C:8-270,C:461-500
1d
2onpD01
D:8-270,D:461-500
1e
2onpE01
E:8-270,E:461-500
1f
2onpF01
F:8-270,F:461-500
1g
2onpG01
G:8-270,G:461-500
1h
2onpH01
H:8-270,H:461-500
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Human (Homo sapiens)
(22)
2a
2onpA02
A:271-460
2b
2onpB02
B:271-460
2c
2onpC02
C:271-460
2d
2onpD02
D:271-460
2e
2onpE02
E:271-460
2f
2onpF02
F:271-460
2g
2onpG02
G:271-460
2h
2onpH02
H:271-460
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (687 KB)
Header - Asym.Unit
Biol.Unit 1 (344 KB)
Header - Biol.Unit 1
Biol.Unit 2 (343 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2ONP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help