PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2ONP
Asym. Unit
Info
Asym.Unit (687 KB)
Biol.Unit 1 (344 KB)
Biol.Unit 2 (343 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
ARG475GLN MUTANT OF HUMAN MITOCHONDRIAL ALDEHYDE DEHYDROGENASE, COMPLEXED WITH NAD+
Authors
:
H. N. Larson, T. D. Hurley
Date
:
24 Jan 07 (Deposition) - 06 Mar 07 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Oxidoreductase, Aldh, Nad, Rossmann Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. N. Larson, J. Zhou, Z. Chen, J. S. Stamler, H. Weiner, T. D. Hurley
Structural And Functional Consequences Of Coenzyme Binding To The Inactive Asian Variant Of Mitochondrial Aldehyde Dehydrogenase: Roles Of Residues 475 And 487.
J. Biol. Chem. V. 282 12940 2007
[
close entry info
]
Hetero Components
(5, 91)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1aa: 1,2-ETHANEDIOL (EDOaa)
1ab: 1,2-ETHANEDIOL (EDOab)
1ac: 1,2-ETHANEDIOL (EDOac)
1ad: 1,2-ETHANEDIOL (EDOad)
1ae: 1,2-ETHANEDIOL (EDOae)
1af: 1,2-ETHANEDIOL (EDOaf)
1ag: 1,2-ETHANEDIOL (EDOag)
1ah: 1,2-ETHANEDIOL (EDOah)
1ai: 1,2-ETHANEDIOL (EDOai)
1aj: 1,2-ETHANEDIOL (EDOaj)
1ak: 1,2-ETHANEDIOL (EDOak)
1al: 1,2-ETHANEDIOL (EDOal)
1am: 1,2-ETHANEDIOL (EDOam)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
1r: 1,2-ETHANEDIOL (EDOr)
1s: 1,2-ETHANEDIOL (EDOs)
1t: 1,2-ETHANEDIOL (EDOt)
1u: 1,2-ETHANEDIOL (EDOu)
1v: 1,2-ETHANEDIOL (EDOv)
1w: 1,2-ETHANEDIOL (EDOw)
1x: 1,2-ETHANEDIOL (EDOx)
1y: 1,2-ETHANEDIOL (EDOy)
1z: 1,2-ETHANEDIOL (EDOz)
2a: GUANIDINE (GAIa)
2aa: GUANIDINE (GAIaa)
2ab: GUANIDINE (GAIab)
2b: GUANIDINE (GAIb)
2c: GUANIDINE (GAIc)
2d: GUANIDINE (GAId)
2e: GUANIDINE (GAIe)
2f: GUANIDINE (GAIf)
2g: GUANIDINE (GAIg)
2h: GUANIDINE (GAIh)
2i: GUANIDINE (GAIi)
2j: GUANIDINE (GAIj)
2k: GUANIDINE (GAIk)
2l: GUANIDINE (GAIl)
2m: GUANIDINE (GAIm)
2n: GUANIDINE (GAIn)
2o: GUANIDINE (GAIo)
2p: GUANIDINE (GAIp)
2q: GUANIDINE (GAIq)
2r: GUANIDINE (GAIr)
2s: GUANIDINE (GAIs)
2t: GUANIDINE (GAIt)
2u: GUANIDINE (GAIu)
2v: GUANIDINE (GAIv)
2w: GUANIDINE (GAIw)
2x: GUANIDINE (GAIx)
2y: GUANIDINE (GAIy)
2z: GUANIDINE (GAIz)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
5b: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADb)
5c: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADc)
5d: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADd)
5e: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADe)
5f: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADf)
5g: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADg)
5h: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADh)
4a: SODIUM ION (NAa)
4b: SODIUM ION (NAb)
4c: SODIUM ION (NAc)
4d: SODIUM ION (NAd)
5e: SODIUM ION (NAe)
5f: SODIUM ION (NAf)
5g: SODIUM ION (NAg)
5h: SODIUM ION (NAh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
39
Ligand/Ion
1,2-ETHANEDIOL
2
GAI
28
Ligand/Ion
GUANIDINE
3
MG
8
Ligand/Ion
MAGNESIUM ION
4
NA
8
Ligand/Ion
SODIUM ION
5
NAD
8
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
[
close Hetero Component info
]
Sites
(91, 91)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
45: EC9 (SOFTWARE)
46: FC1 (SOFTWARE)
47: FC2 (SOFTWARE)
48: FC3 (SOFTWARE)
49: FC4 (SOFTWARE)
50: FC5 (SOFTWARE)
51: FC6 (SOFTWARE)
52: FC7 (SOFTWARE)
53: FC8 (SOFTWARE)
54: FC9 (SOFTWARE)
55: GC1 (SOFTWARE)
56: GC2 (SOFTWARE)
57: GC3 (SOFTWARE)
58: GC4 (SOFTWARE)
59: GC5 (SOFTWARE)
60: GC6 (SOFTWARE)
61: GC7 (SOFTWARE)
62: GC8 (SOFTWARE)
63: GC9 (SOFTWARE)
64: HC1 (SOFTWARE)
65: HC2 (SOFTWARE)
66: HC3 (SOFTWARE)
67: HC4 (SOFTWARE)
68: HC5 (SOFTWARE)
69: HC6 (SOFTWARE)
70: HC7 (SOFTWARE)
71: HC8 (SOFTWARE)
72: HC9 (SOFTWARE)
73: IC1 (SOFTWARE)
74: IC2 (SOFTWARE)
75: IC3 (SOFTWARE)
76: IC4 (SOFTWARE)
77: IC5 (SOFTWARE)
78: IC6 (SOFTWARE)
79: IC7 (SOFTWARE)
80: IC8 (SOFTWARE)
81: IC9 (SOFTWARE)
82: JC1 (SOFTWARE)
83: JC2 (SOFTWARE)
84: JC3 (SOFTWARE)
85: JC4 (SOFTWARE)
86: JC5 (SOFTWARE)
87: JC6 (SOFTWARE)
88: JC7 (SOFTWARE)
89: JC8 (SOFTWARE)
90: JC9 (SOFTWARE)
91: KC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
NAD A:501 , HOH A:3300
BINDING SITE FOR RESIDUE MG A 601
02
AC2
SOFTWARE
NAD B:502 , HOH B:3302 , HOH B:3303
BINDING SITE FOR RESIDUE MG B 602
03
AC3
SOFTWARE
NAD C:503 , HOH C:1373 , HOH C:3305 , HOH C:3306
BINDING SITE FOR RESIDUE MG C 603
04
AC4
SOFTWARE
NAD D:504 , HOH D:2967
BINDING SITE FOR RESIDUE MG D 604
05
AC5
SOFTWARE
NAD E:505 , HOH E:3056 , HOH E:3291 , HOH E:3292
BINDING SITE FOR RESIDUE MG E 605
06
AC6
SOFTWARE
NAD F:506 , HOH F:1820 , HOH F:3293 , HOH F:3294
BINDING SITE FOR RESIDUE MG F 606
07
AC7
SOFTWARE
NAD G:507 , HOH G:3297
BINDING SITE FOR RESIDUE MG G 607
08
AC8
SOFTWARE
NAD H:508 , HOH H:3625
BINDING SITE FOR RESIDUE MG H 608
09
AC9
SOFTWARE
THR A:39 , VAL A:40 , ASP A:109 , GLN A:196
BINDING SITE FOR RESIDUE NA A 701
10
BC1
SOFTWARE
THR B:39 , VAL B:40 , ASP B:109 , GLN B:196 , HOH B:2405
BINDING SITE FOR RESIDUE NA B 702
11
BC2
SOFTWARE
THR C:39 , VAL C:40 , ASP C:109 , GLN C:196 , HOH C:1740 , HOH C:2442
BINDING SITE FOR RESIDUE NA C 703
12
BC3
SOFTWARE
THR D:39 , VAL D:40 , ASP D:109 , GLN D:196 , HOH D:2188 , HOH D:3319
BINDING SITE FOR RESIDUE NA D 704
13
BC4
SOFTWARE
THR E:39 , VAL E:40 , ASP E:109 , GLN E:196
BINDING SITE FOR RESIDUE NA E 705
14
BC5
SOFTWARE
THR F:39 , VAL F:40 , ASP F:109 , GLN F:196 , HOH F:1179 , HOH F:2608
BINDING SITE FOR RESIDUE NA F 706
15
BC6
SOFTWARE
THR G:39 , VAL G:40 , ASP G:109 , GLN G:196 , HOH G:2853
BINDING SITE FOR RESIDUE NA G 707
16
BC7
SOFTWARE
VAL H:40 , ASP H:109 , GLN H:196 , HOH H:2121
BINDING SITE FOR RESIDUE NA H 708
17
BC8
SOFTWARE
ILE A:165 , ILE A:166 , PRO A:167 , TRP A:168 , ASN A:169 , LYS A:192 , GLU A:195 , GLY A:225 , GLY A:229 , ALA A:230 , PHE A:243 , GLY A:245 , SER A:246 , ILE A:249 , ILE A:253 , LEU A:269 , CYS A:302 , GLN A:349 , GLU A:399 , PHE A:401 , MG A:601 , HOH A:1882 , HOH A:2651 , HOH A:3077 , HOH A:3483
BINDING SITE FOR RESIDUE NAD A 501
18
BC9
SOFTWARE
ILE B:165 , ILE B:166 , PRO B:167 , TRP B:168 , ASN B:169 , LYS B:192 , GLU B:195 , GLN B:196 , GLY B:225 , GLY B:229 , ALA B:230 , PHE B:243 , GLY B:245 , SER B:246 , ILE B:249 , ILE B:253 , GLU B:268 , LEU B:269 , CYS B:302 , GLN B:349 , LYS B:352 , GLU B:399 , PHE B:401 , MG B:602 , HOH B:1512 , HOH B:3173 , HOH B:3302 , HOH B:3303
BINDING SITE FOR RESIDUE NAD B 502
19
CC1
SOFTWARE
ILE C:165 , ILE C:166 , PRO C:167 , TRP C:168 , ASN C:169 , LYS C:192 , GLU C:195 , GLN C:196 , GLY C:225 , PRO C:226 , GLY C:229 , ALA C:230 , PHE C:243 , GLY C:245 , SER C:246 , ILE C:249 , ILE C:253 , GLU C:268 , LEU C:269 , CYS C:302 , GLN C:349 , LYS C:352 , GLU C:399 , PHE C:401 , MG C:603 , HOH C:1102 , HOH C:1503 , HOH C:1710 , HOH C:1825 , HOH C:2260 , HOH C:3306
BINDING SITE FOR RESIDUE NAD C 503
20
CC2
SOFTWARE
ILE D:165 , ILE D:166 , PRO D:167 , TRP D:168 , ASN D:169 , LYS D:192 , GLU D:195 , GLY D:225 , GLY D:229 , ALA D:230 , PHE D:243 , GLY D:245 , SER D:246 , ILE D:249 , ILE D:253 , LEU D:269 , CYS D:302 , GLN D:349 , LYS D:352 , GLU D:399 , PHE D:401 , MG D:604 , HOH D:1443
BINDING SITE FOR RESIDUE NAD D 504
21
CC3
SOFTWARE
ILE E:165 , ILE E:166 , PRO E:167 , TRP E:168 , ASN E:169 , LYS E:192 , GLU E:195 , GLN E:196 , GLY E:225 , GLY E:229 , ALA E:230 , PHE E:243 , GLY E:245 , SER E:246 , ILE E:249 , ILE E:253 , LEU E:269 , CYS E:302 , GLN E:349 , LYS E:352 , GLU E:399 , MG E:605 , HOH E:1493 , HOH E:1716 , HOH E:2017 , HOH E:2682 , HOH E:3355
BINDING SITE FOR RESIDUE NAD E 505
22
CC4
SOFTWARE
ILE F:165 , ILE F:166 , PRO F:167 , TRP F:168 , ASN F:169 , LYS F:192 , GLU F:195 , GLN F:196 , GLY F:225 , GLY F:229 , ALA F:230 , PHE F:243 , GLY F:245 , SER F:246 , ILE F:249 , ILE F:253 , GLU F:268 , LEU F:269 , CYS F:302 , GLN F:349 , LYS F:352 , GLU F:399 , PHE F:401 , MG F:606 , HOH F:1207 , HOH F:1487 , HOH F:1584 , HOH F:1820 , HOH F:1876 , HOH F:2813 , HOH F:3294
BINDING SITE FOR RESIDUE NAD F 506
23
CC5
SOFTWARE
ILE G:165 , ILE G:166 , PRO G:167 , TRP G:168 , ASN G:169 , LYS G:192 , ALA G:194 , GLU G:195 , GLN G:196 , GLY G:225 , GLY G:229 , ALA G:230 , PHE G:243 , GLY G:245 , SER G:246 , ILE G:249 , LEU G:269 , CYS G:302 , GLN G:349 , LYS G:352 , GLU G:399 , PHE G:401 , MG G:607 , HOH G:1706 , HOH G:3257 , HOH G:3297
BINDING SITE FOR RESIDUE NAD G 507
24
CC6
SOFTWARE
ILE H:165 , ILE H:166 , PRO H:167 , TRP H:168 , ASN H:169 , LYS H:192 , ALA H:194 , GLU H:195 , GLN H:196 , GLY H:225 , GLY H:229 , ALA H:230 , PHE H:243 , GLY H:245 , SER H:246 , ILE H:249 , ILE H:253 , GLU H:268 , LEU H:269 , CYS H:302 , GLN H:349 , GLU H:399 , PHE H:401 , MG H:608 , HOH H:1520 , HOH H:1826 , HOH H:3121 , HOH H:3298
BINDING SITE FOR RESIDUE NAD H 508
25
CC7
SOFTWARE
TYR A:153 , ARG A:155 , HOH A:3200 , SER B:443 , PHE D:151
BINDING SITE FOR RESIDUE EDO A 6901
26
CC8
SOFTWARE
ASN A:41 , THR A:44 , GLU A:46 , VAL A:47 , ILE A:48
BINDING SITE FOR RESIDUE EDO A 6911
27
CC9
SOFTWARE
PHE A:18 , TYR A:101 , TYR A:203 , HOH A:1743
BINDING SITE FOR RESIDUE EDO A 6921
28
DC1
SOFTWARE
TYR A:441 , GLN A:444 , ALA A:445 , GLN C:497 , HOH C:2484
BINDING SITE FOR RESIDUE EDO A 6941
29
DC2
SOFTWARE
ALA A:68 , HOH A:2742
BINDING SITE FOR RESIDUE EDO A 6951
30
DC3
SOFTWARE
SER A:443 , TYR B:153 , ARG B:155 , PHE C:151
BINDING SITE FOR RESIDUE EDO B 6902
31
DC4
SOFTWARE
ASN B:41 , THR B:44 , LEU B:108
BINDING SITE FOR RESIDUE EDO B 6912
32
DC5
SOFTWARE
TYR B:441 , GLN B:444 , ALA B:445 , HOH B:2904 , GLN D:497
BINDING SITE FOR RESIDUE EDO B 6942
33
DC6
SOFTWARE
ALA B:68 , GLN B:71 , HOH B:3168
BINDING SITE FOR RESIDUE EDO B 6952
34
DC7
SOFTWARE
GLU B:347 , LYS B:351 , HOH F:3398 , EDO F:6956
BINDING SITE FOR RESIDUE EDO B 6962
35
DC8
SOFTWARE
PHE B:151 , TYR C:153 , ARG C:155 , SER D:443
BINDING SITE FOR RESIDUE EDO C 6903
36
DC9
SOFTWARE
ASN C:41 , THR C:44 , GLU C:46 , LEU C:108
BINDING SITE FOR RESIDUE EDO C 6913
37
EC1
SOFTWARE
PHE C:18 , TYR C:101 , TYR C:203 , HOH C:1818
BINDING SITE FOR RESIDUE EDO C 6923
38
EC2
SOFTWARE
GLN A:497 , HOH A:1115 , TYR C:441 , GLN C:444 , ALA C:445 , LEU D:72
BINDING SITE FOR RESIDUE EDO C 6943
39
EC3
SOFTWARE
ALA C:68 , SER C:74 , HOH C:1277 , ILE G:373 , HOH G:3426
BINDING SITE FOR RESIDUE EDO C 6953
40
EC4
SOFTWARE
GLU C:347 , PHE C:350 , GAI C:6823 , GLY F:45
BINDING SITE FOR RESIDUE EDO C 6963
41
EC5
SOFTWARE
PHE A:151 , SER C:443 , TYR D:153 , ARG D:155
BINDING SITE FOR RESIDUE EDO D 6904
42
EC6
SOFTWARE
ASN D:41 , THR D:44 , GLU D:46
BINDING SITE FOR RESIDUE EDO D 6914
43
EC7
SOFTWARE
PHE D:18 , TYR D:101 , TYR D:203 , HOH D:1845
BINDING SITE FOR RESIDUE EDO D 6924
44
EC8
SOFTWARE
TYR E:153 , ARG E:155 , SER F:443 , PHE H:151
BINDING SITE FOR RESIDUE EDO E 6905
45
EC9
SOFTWARE
ASN E:41 , THR E:44 , GLU E:46 , LEU E:108
BINDING SITE FOR RESIDUE EDO E 6915
46
FC1
SOFTWARE
TYR E:101 , TYR E:203 , HOH E:2156 , HOH E:3574
BINDING SITE FOR RESIDUE EDO E 6925
47
FC2
SOFTWARE
TYR E:441 , GLN E:444 , ALA E:445 , LEU F:72 , GLN G:497 , HOH G:1590
BINDING SITE FOR RESIDUE EDO E 6945
48
FC3
SOFTWARE
LEU E:72 , GLY E:73 , SER E:74 , HOH E:1468
BINDING SITE FOR RESIDUE EDO E 6955
49
FC4
SOFTWARE
HOH D:3326 , GLU E:347 , PHE E:350 , LYS E:351
BINDING SITE FOR RESIDUE EDO E 6965
50
FC5
SOFTWARE
SER E:443 , TYR F:153 , ARG F:155 , PHE G:151
BINDING SITE FOR RESIDUE EDO F 6906
51
FC6
SOFTWARE
ASN F:41 , THR F:44 , GLU F:46 , LEU F:108
BINDING SITE FOR RESIDUE EDO F 6916
52
FC7
SOFTWARE
ARG E:321 , HOH E:2964 , PHE F:18 , TYR F:101 , TYR F:203 , HOH F:3579
BINDING SITE FOR RESIDUE EDO F 6926
53
FC8
SOFTWARE
LEU E:72 , TYR F:441 , GLN F:444 , ALA F:445 , HOH F:1592 , GLN H:497
BINDING SITE FOR RESIDUE EDO F 6946
54
FC9
SOFTWARE
ILE B:373 , EDO B:6962 , ALA F:68 , GLN F:71 , HOH F:1658
BINDING SITE FOR RESIDUE EDO F 6956
55
GC1
SOFTWARE
VAL C:40 , GLY C:45 , HOH C:1657 , GLU F:347 , GAI F:6826
BINDING SITE FOR RESIDUE EDO F 6966
56
GC2
SOFTWARE
PHE F:151 , TYR G:153 , ARG G:155 , SER H:443
BINDING SITE FOR RESIDUE EDO G 6907
57
GC3
SOFTWARE
ASN G:41 , THR G:44 , GLU G:46
BINDING SITE FOR RESIDUE EDO G 6917
58
GC4
SOFTWARE
PHE G:18 , TYR G:101 , TYR G:203
BINDING SITE FOR RESIDUE EDO G 6927
59
GC5
SOFTWARE
GLN E:497 , TYR G:441 , GLN G:444 , ALA G:445 , HOH G:2989 , LEU H:72
BINDING SITE FOR RESIDUE EDO G 6947
60
GC6
SOFTWARE
PHE E:151 , SER G:443 , TYR H:153 , ARG H:155 , VAL H:491
BINDING SITE FOR RESIDUE EDO H 6908
61
GC7
SOFTWARE
ASN H:41 , THR H:44 , LEU H:108 , HOH H:3273
BINDING SITE FOR RESIDUE EDO H 6918
62
GC8
SOFTWARE
PHE H:18 , TYR H:101 , TYR H:203 , HOH H:3382
BINDING SITE FOR RESIDUE EDO H 6928
63
GC9
SOFTWARE
GLN F:497 , LEU G:72 , TYR H:441 , GLN H:444 , ALA H:445 , HOH H:2068
BINDING SITE FOR RESIDUE EDO H 6948
64
HC1
SOFTWARE
GLU A:157 , PRO A:158 , VAL A:159 , HOH A:1423 , HOH A:1773
BINDING SITE FOR RESIDUE GAI A 6801
65
HC2
SOFTWARE
ASP A:147 , PHE A:150 , HOH A:2923 , PHE B:459 , HOH B:2373
BINDING SITE FOR RESIDUE GAI A 6811
66
HC3
SOFTWARE
ILE A:373 , ALA A:375 , ASP A:376 , GLY A:378
BINDING SITE FOR RESIDUE GAI A 6821
67
HC4
SOFTWARE
TYR A:468 , GLU B:157 , PRO B:158 , VAL B:159 , HOH B:1219 , HOH B:2730
BINDING SITE FOR RESIDUE GAI B 6802
68
HC5
SOFTWARE
PHE A:459 , HOH A:2071 , ASP B:147 , PHE B:150
BINDING SITE FOR RESIDUE GAI B 6812
69
HC6
SOFTWARE
GLU C:157 , PRO C:158 , VAL C:159
BINDING SITE FOR RESIDUE GAI C 6803
70
HC7
SOFTWARE
ILE C:146 , ASP C:147 , PHE D:459
BINDING SITE FOR RESIDUE GAI C 6813
71
HC8
SOFTWARE
PHE C:350 , ALA C:375 , ASP C:376 , GLY C:378 , EDO C:6963
BINDING SITE FOR RESIDUE GAI C 6823
72
HC9
SOFTWARE
TYR C:468 , GLU D:157 , PRO D:158 , VAL D:159 , HOH D:1964 , HOH D:2702
BINDING SITE FOR RESIDUE GAI D 6804
73
IC1
SOFTWARE
PHE C:459 , HOH C:1550 , ILE D:146 , ASP D:147 , PHE D:150
BINDING SITE FOR RESIDUE GAI D 6814
74
IC2
SOFTWARE
PHE D:350 , ILE D:373 , ALA D:375 , ASP D:376 , GLY D:378
BINDING SITE FOR RESIDUE GAI D 6824
75
IC3
SOFTWARE
GLU E:157 , PRO E:158 , VAL E:159
BINDING SITE FOR RESIDUE GAI E 6805
76
IC4
SOFTWARE
ILE E:146 , ASP E:147 , PHE E:150 , PHE F:459
BINDING SITE FOR RESIDUE GAI E 6815
77
IC5
SOFTWARE
TYR E:468 , GLU F:157 , PRO F:158 , VAL F:159 , HOH F:1587 , HOH F:1684
BINDING SITE FOR RESIDUE GAI F 6806
78
IC6
SOFTWARE
PHE E:459 , HOH E:3039 , ILE F:146 , ASP F:147
BINDING SITE FOR RESIDUE GAI F 6816
79
IC7
SOFTWARE
ALA F:375 , ASP F:376 , GLY F:378 , EDO F:6966
BINDING SITE FOR RESIDUE GAI F 6826
80
IC8
SOFTWARE
GLU G:157 , PRO G:158 , VAL G:159 , HOH G:3389
BINDING SITE FOR RESIDUE GAI G 6807
81
IC9
SOFTWARE
ILE G:146 , ASP G:147 , PHE G:150 , PHE H:459 , HOH H:2631
BINDING SITE FOR RESIDUE GAI G 6817
82
JC1
SOFTWARE
GLN G:447 , TYR G:468 , GLU H:157 , PRO H:158 , VAL H:159
BINDING SITE FOR RESIDUE GAI H 6808
83
JC2
SOFTWARE
PHE G:459 , ILE H:146 , ASP H:147 , PHE H:150
BINDING SITE FOR RESIDUE GAI H 6818
84
JC3
SOFTWARE
ARG A:264 , GLU A:487 , HOH A:1705 , GLY B:467 , TYR B:468 , LYS B:469 , GLY B:472
BINDING SITE FOR RESIDUE GAI B 6831
85
JC4
SOFTWARE
GLY A:467 , TYR A:468 , LYS A:469 , GLY A:472 , ARG B:264 , GLU B:487 , HOH B:2170
BINDING SITE FOR RESIDUE GAI A 6832
86
JC5
SOFTWARE
ARG C:264 , GLU C:487 , HOH C:2229 , GLY D:467 , TYR D:468 , LYS D:469 , GLY D:472
BINDING SITE FOR RESIDUE GAI D 6833
87
JC6
SOFTWARE
GLY C:467 , TYR C:468 , LYS C:469 , GLY C:472 , ARG D:264 , GLU D:487
BINDING SITE FOR RESIDUE GAI C 6834
88
JC7
SOFTWARE
ARG E:264 , GLU E:487 , HOH E:3368 , GLY F:467 , TYR F:468 , LYS F:469 , GLY F:472
BINDING SITE FOR RESIDUE GAI E 6835
89
JC8
SOFTWARE
GLY E:467 , LYS E:469 , GLY E:472 , ARG F:264 , GLU F:487
BINDING SITE FOR RESIDUE GAI E 6836
90
JC9
SOFTWARE
ARG G:264 , GLU G:487 , HOH G:2123 , HOH G:3057 , GLY H:467 , LYS H:469 , GLY H:472 , HOH H:3390
BINDING SITE FOR RESIDUE GAI H 6837
91
KC1
SOFTWARE
GLY G:467 , LYS G:469 , GLY G:472 , ARG H:264 , GLU H:487
BINDING SITE FOR RESIDUE GAI G 6838
[
close Site info
]
SAPs(SNPs)/Variants
(3, 24)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_011869 (E320V, chain A/B/C/D/E/F/G/H, )
2: VAR_011302 (E479K, chain A/B/C/D/E/F/G/H, )
3: VAR_002248 (E487K, chain A/B/C/D/E/F/G/H, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_011869
E
337
V
ALDH2_HUMAN
Polymorphism
1062136
A/B/C/D/E/F/G/H
E
320
V
2
UniProt
VAR_011302
E
496
K
ALDH2_HUMAN
Polymorphism
---
A/B/C/D/E/F/G/H
E
479
K
3
UniProt
VAR_002248
E
504
K
ALDH2_HUMAN
Polymorphism
671
A/B/C/D/E/F/G/H
E
487
K
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(2, 16)
Info
All PROSITE Patterns/Profiles
1: ALDEHYDE_DEHYDR_GLU (A:267-274,B:267-274,C:267-274,D:26...)
2: ALDEHYDE_DEHYDR_CYS (A:295-306,B:295-306,C:295-306,D:29...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ALDEHYDE_DEHYDR_GLU
PS00687
Aldehyde dehydrogenases glutamic acid active site.
ALDH2_HUMAN
284-291
8
A:267-274
B:267-274
C:267-274
D:267-274
E:267-274
F:267-274
G:267-274
H:267-274
2
ALDEHYDE_DEHYDR_CYS
PS00070
Aldehyde dehydrogenases cysteine active site.
ALDH2_HUMAN
312-323
8
A:295-306
B:295-306
C:295-306
D:295-306
E:295-306
F:295-306
G:295-306
H:295-306
[
close PROSITE info
]
Exons
(13, 104)
Info
All Exons
Exon 1.1 (A:7-21 | B:7-21 | C:7-21 | D:7-21 ...)
Exon 1.2 (A:22-56 | B:22-56 | C:22-56 | D:22...)
Exon 1.3 (A:57-103 | B:57-103 | C:57-103 | D...)
Exon 1.4 (A:104-130 | B:104-130 | C:104-130 ...)
Exon 1.5 (A:130-167 | B:130-167 | C:130-167 ...)
Exon 1.6 (A:168-210 | B:168-210 | C:168-210 ...)
Exon 1.7 (A:211-248 | B:211-248 | C:211-248 ...)
Exon 1.8 (A:249-283 | B:249-283 | C:249-283 ...)
Exon 1.9 (A:283-344 | B:283-344 | C:283-344 ...)
Exon 1.10 (A:345-399 | B:345-399 | C:345-399 ...)
Exon 1.11 (A:400-452 | B:400-452 | C:400-452 ...)
Exon 1.12 (A:452-490 | B:452-490 | C:452-490 ...)
Exon 1.13 (A:491-500 | B:491-500 | C:491-500 ...)
View:
Select:
Label:
All Exon Boundaries
01: Boundary -/1.1
02: Boundary 1.1/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.13
14: Boundary 1.13/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000261733
1
ENSE00001297894
chr12:
112204346-112204900
555
ALDH2_HUMAN
1-38
38
8
A:7-21
B:7-21
C:7-21
D:7-21
E:7-21
F:7-21
G:7-21
H:7-21
15
15
15
15
15
15
15
15
1.2
ENST00000261733
2
ENSE00001302483
chr12:
112219722-112219826
105
ALDH2_HUMAN
39-73
35
8
A:22-56
B:22-56
C:22-56
D:22-56
E:22-56
F:22-56
G:22-56
H:22-56
35
35
35
35
35
35
35
35
1.3
ENST00000261733
3
ENSE00000755216
chr12:
112220962-112221102
141
ALDH2_HUMAN
74-120
47
8
A:57-103
B:57-103
C:57-103
D:57-103
E:57-103
F:57-103
G:57-103
H:57-103
47
47
47
47
47
47
47
47
1.4
ENST00000261733
4
ENSE00000755217
chr12:
112223071-112223150
80
ALDH2_HUMAN
121-147
27
8
A:104-130
B:104-130
C:104-130
D:104-130
E:104-130
F:104-130
G:104-130
H:104-130
27
27
27
27
27
27
27
27
1.5
ENST00000261733
5
ENSE00000755218
chr12:
112227627-112227738
112
ALDH2_HUMAN
147-184
38
8
A:130-167
B:130-167
C:130-167
D:130-167
E:130-167
F:130-167
G:130-167
H:130-167
38
38
38
38
38
38
38
38
1.6
ENST00000261733
6
ENSE00001316176
chr12:
112228238-112228366
129
ALDH2_HUMAN
185-227
43
8
A:168-210
B:168-210
C:168-210
D:168-210
E:168-210
F:168-210
G:168-210
H:168-210
43
43
43
43
43
43
43
43
1.7
ENST00000261733
7
ENSE00000755220
chr12:
112229110-112229223
114
ALDH2_HUMAN
228-265
38
8
A:211-248
B:211-248
C:211-248
D:211-248
E:211-248
F:211-248
G:211-248
H:211-248
38
38
38
38
38
38
38
38
1.8
ENST00000261733
8
ENSE00000755221
chr12:
112229865-112229967
103
ALDH2_HUMAN
266-300
35
8
A:249-283
B:249-283
C:249-283
D:249-283
E:249-283
F:249-283
G:249-283
H:249-283
35
35
35
35
35
35
35
35
1.9
ENST00000261733
9
ENSE00000755222
chr12:
112230402-112230586
185
ALDH2_HUMAN
300-361
62
8
A:283-344
B:283-344
C:283-344
D:283-344
E:283-344
F:283-344
G:283-344
H:283-344
62
62
62
62
62
62
62
62
1.10
ENST00000261733
10
ENSE00000755223
chr12:
112235882-112236046
165
ALDH2_HUMAN
362-416
55
8
A:345-399
B:345-399
C:345-399
D:345-399
E:345-399
F:345-399
G:345-399
H:345-399
55
55
55
55
55
55
55
55
1.11
ENST00000261733
11
ENSE00000755233
chr12:
112237710-112237867
158
ALDH2_HUMAN
417-469
53
8
A:400-452
B:400-452
C:400-452
D:400-452
E:400-452
F:400-452
G:400-452
H:400-452
53
53
53
53
53
53
53
53
1.12
ENST00000261733
12
ENSE00001304774
chr12:
112241663-112241777
115
ALDH2_HUMAN
469-507
39
8
A:452-490
B:452-490
C:452-490
D:452-490
E:452-490
F:452-490
G:452-490
H:452-490
39
39
39
39
39
39
39
39
1.13
ENST00000261733
13
ENSE00001129780
chr12:
112247347-112247782
436
ALDH2_HUMAN
508-517
10
8
A:491-500
B:491-500
C:491-500
D:491-500
E:491-500
F:491-500
G:491-500
H:491-500
10
10
10
10
10
10
10
10
[
close EXON info
]
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d2onpa_ (A:)
1b: SCOP_d2onpb_ (B:)
1c: SCOP_d2onpc_ (C:)
1d: SCOP_d2onpd_ (D:)
1e: SCOP_d2onpe_ (E:)
1f: SCOP_d2onpf_ (F:)
1g: SCOP_d2onpg_ (G:)
1h: SCOP_d2onph_ (H:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
ALDH-like
(168)
Superfamily
:
ALDH-like
(168)
Family
:
ALDH-like
(76)
Protein domain
:
Aldehyde reductase (dehydrogenase), ALDH
(39)
Human (Homo sapiens), mitochondrial [TaxId: 9606]
(25)
1a
d2onpa_
A:
1b
d2onpb_
B:
1c
d2onpc_
C:
1d
d2onpd_
D:
1e
d2onpe_
E:
1f
d2onpf_
F:
1g
d2onpg_
G:
1h
d2onph_
H:
[
close SCOP info
]
CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2onpA01 (A:8-270,A:461-500)
1b: CATH_2onpB01 (B:8-270,B:461-500)
1c: CATH_2onpC01 (C:8-270,C:461-500)
1d: CATH_2onpD01 (D:8-270,D:461-500)
1e: CATH_2onpE01 (E:8-270,E:461-500)
1f: CATH_2onpF01 (F:8-270,F:461-500)
1g: CATH_2onpG01 (G:8-270,G:461-500)
1h: CATH_2onpH01 (H:8-270,H:461-500)
2a: CATH_2onpA02 (A:271-460)
2b: CATH_2onpB02 (B:271-460)
2c: CATH_2onpC02 (C:271-460)
2d: CATH_2onpD02 (D:271-460)
2e: CATH_2onpE02 (E:271-460)
2f: CATH_2onpF02 (F:271-460)
2g: CATH_2onpG02 (G:271-460)
2h: CATH_2onpH02 (H:271-460)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 1
(86)
Human (Homo sapiens)
(22)
1a
2onpA01
A:8-270,A:461-500
1b
2onpB01
B:8-270,B:461-500
1c
2onpC01
C:8-270,C:461-500
1d
2onpD01
D:8-270,D:461-500
1e
2onpE01
E:8-270,E:461-500
1f
2onpF01
F:8-270,F:461-500
1g
2onpG01
G:8-270,G:461-500
1h
2onpH01
H:8-270,H:461-500
Topology
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Homologous Superfamily
:
Aldehyde Dehydrogenase; Chain A, domain 2
(89)
Human (Homo sapiens)
(22)
2a
2onpA02
A:271-460
2b
2onpB02
B:271-460
2c
2onpC02
C:271-460
2d
2onpD02
D:271-460
2e
2onpE02
E:271-460
2f
2onpF02
F:271-460
2g
2onpG02
G:271-460
2h
2onpH02
H:271-460
[
close CATH info
]
Pfam Domains
(0, 0)
Info
all PFAM domains
View:
Select:
Label:
Sorry, no Info available
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (687 KB)
Header - Asym.Unit
Biol.Unit 1 (344 KB)
Header - Biol.Unit 1
Biol.Unit 2 (343 KB)
Header - Biol.Unit 2
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2ONP
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help