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Getting 'Exon' information from database.
2ONI
Asym. Unit
Info
Asym.Unit (147 KB)
Biol.Unit 1 (270 KB)
Biol.Unit 2 (804 KB)
Biol.Unit 3 (136 KB)
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(1)
Title
:
CATALYTIC DOMAIN OF THE HUMAN NEDD4-LIKE E3 LIGASE
Authors
:
J. R. Walker, G. V. Avvakumov, S. Xue, C. Butler-Cole, J. Weigelt, M. Sun C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon, Struct Genomics Consortium (Sgc)
Date
:
24 Jan 07 (Deposition) - 17 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Biol. Unit 2: A (6x)
Biol. Unit 3: A (1x)
Keywords
:
Alpha And Beta Protein (A + B), E3 Ligase, Hect Domain, Ubl- Conjugation Pathway, Structural Genomics Consortium, Sgc, Ligase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
J. R. Walker, G. V. Avvakumov, S. Xue, C. Butler-Cole, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, S. Dhe-Paganon
Nedd4-Like E3 Ubiquitin-Protein Ligase
To Be Published
[
close entry info
]
Hetero Components
(2, 14)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
2a: SODIUM ION (NAa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MSE
13
Mod. Amino Acid
SELENOMETHIONINE
2
NA
1
Ligand/Ion
SODIUM ION
[
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]
Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
THR A:883 , TYR A:897 , THR A:921 , ASN A:924
BINDING SITE FOR RESIDUE NA A 1000
[
close Site info
]
SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_077880 (Y659C, chain A, )
2: VAR_077881 (Q674H, chain A, )
3: VAR_077882 (E873K, chain A, )
4: VAR_077883 (R877Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_077880
Y
679
C
NED4L_HUMAN
Disease (PVNH7)
879255599
A
Y
659
C
2
UniProt
VAR_077881
Q
694
H
NED4L_HUMAN
Disease (PVNH7)
879255598
A
Q
674
H
3
UniProt
VAR_077882
E
893
K
NED4L_HUMAN
Disease (PVNH7)
879255597
A
E
873
K
4
UniProt
VAR_077883
R
897
Q
NED4L_HUMAN
Disease (PVNH7)
879255596
A
R
877
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: HECT (A:620-946)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HECT
PS50237
HECT domain profile.
NED4L_HUMAN
640-974
1
A:620-946
[
close PROSITE info
]
Exons
(13, 13)
Info
All Exons
Exon 1.23 (A:569-573)
Exon 1.25 (A:574-591)
Exon 1.26 (A:592-668 (gaps))
Exon 1.27 (A:668-709)
Exon 1.28 (A:709-732)
Exon 1.29 (A:733-764)
Exon 1.30 (A:765-789)
Exon 1.31 (A:789-809)
Exon 1.32 (A:810-829)
Exon 1.33 (A:830-865)
Exon 1.34 (A:866-898)
Exon 1.35 (A:898-922)
Exon 1.36 (A:922-946)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.22/1.23
02: Boundary 1.23/1.24
03: Boundary 1.24/1.25
04: Boundary 1.25/1.26
05: Boundary 1.26/1.27
06: Boundary 1.27/1.28
07: Boundary 1.28/1.29
08: Boundary 1.29/1.30
09: Boundary 1.30/1.31
10: Boundary 1.31/1.32
11: Boundary 1.32/1.33
12: Boundary 1.33/1.34
13: Boundary 1.34/1.35
14: Boundary 1.35/1.36
15: Boundary 1.36/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000400345
1
ENSE00001683001
chr18:
55711619-55711940
322
NED4L_HUMAN
1-16
16
0
-
-
1.4
ENST00000400345
4
ENSE00001648238
chr18:
55833020-55833093
74
NED4L_HUMAN
17-41
25
0
-
-
1.8
ENST00000400345
8
ENSE00001615561
chr18:
55912659-55912740
82
NED4L_HUMAN
41-68
28
0
-
-
1.9
ENST00000400345
9
ENSE00001662674
chr18:
55916131-55916169
39
NED4L_HUMAN
69-81
13
0
-
-
1.10
ENST00000400345
10
ENSE00001795248
chr18:
55919233-55919286
54
NED4L_HUMAN
82-99
18
0
-
-
1.11
ENST00000400345
11
ENSE00001721236
chr18:
55983214-55983264
51
NED4L_HUMAN
100-116
17
0
-
-
1.12
ENST00000400345
12
ENSE00001691252
chr18:
55989657-55989718
62
NED4L_HUMAN
117-137
21
0
-
-
1.13
ENST00000400345
13
ENSE00001159817
chr18:
55990464-55990566
103
NED4L_HUMAN
137-171
35
0
-
-
1.14
ENST00000400345
14
ENSE00001159809
chr18:
55992228-55992394
167
NED4L_HUMAN
172-227
56
0
-
-
1.15
ENST00000400345
15
ENSE00001159803
chr18:
55996227-55996359
133
NED4L_HUMAN
227-271
45
0
-
-
1.16
ENST00000400345
16
ENSE00001159795
chr18:
55997970-55998146
177
NED4L_HUMAN
272-330
59
0
-
-
1.17
ENST00000400345
17
ENSE00000807241
chr18:
56001050-56001124
75
NED4L_HUMAN
331-355
25
0
-
-
1.18
ENST00000400345
18
ENSE00000914600
chr18:
56002710-56002769
60
NED4L_HUMAN
356-375
20
0
-
-
1.19
ENST00000400345
19
ENSE00000914602
chr18:
56008270-56008401
132
NED4L_HUMAN
376-419
44
0
-
-
1.20
ENST00000400345
20
ENSE00000807243
chr18:
56008910-56009029
120
NED4L_HUMAN
420-459
40
0
-
-
1.21
ENST00000400345
21
ENSE00000669702
chr18:
56010138-56010335
198
NED4L_HUMAN
460-525
66
0
-
-
1.22
ENST00000400345
22
ENSE00000914615
chr18:
56016769-56016846
78
NED4L_HUMAN
526-551
26
0
-
-
1.23
ENST00000400345
23
ENSE00000914622
chr18:
56018223-56018277
55
NED4L_HUMAN
552-570
19
1
A:569-573
5
1.24
ENST00000400345
24
ENSE00000807247
chr18:
56024426-56024484
59
NED4L_HUMAN
570-589
20
0
-
-
1.25
ENST00000400345
25
ENSE00000914638
chr18:
56031500-56031565
66
NED4L_HUMAN
590-611
22
1
A:574-591
18
1.26
ENST00000400345
26
ENSE00000807249
chr18:
56033231-56033460
230
NED4L_HUMAN
612-688
77
1
A:592-668 (gaps)
77
1.27
ENST00000400345
27
ENSE00000914645
chr18:
56034978-56035099
122
NED4L_HUMAN
688-729
42
1
A:668-709
42
1.28
ENST00000400345
28
ENSE00000669736
chr18:
56037629-56037699
71
NED4L_HUMAN
729-752
24
1
A:709-732
24
1.29
ENST00000400345
29
ENSE00000486414
chr18:
56040406-56040501
96
NED4L_HUMAN
753-784
32
1
A:733-764
32
1.30
ENST00000400345
30
ENSE00000914660
chr18:
56050478-56050551
74
NED4L_HUMAN
785-809
25
1
A:765-789
25
1.31
ENST00000400345
31
ENSE00000914663
chr18:
56052758-56052818
61
NED4L_HUMAN
809-829
21
1
A:789-809
21
1.32
ENST00000400345
32
ENSE00000914668
chr18:
56054671-56054730
60
NED4L_HUMAN
830-849
20
1
A:810-829
20
1.33
ENST00000400345
33
ENSE00000914673
chr18:
56056317-56056424
108
NED4L_HUMAN
850-885
36
1
A:830-865
36
1.34
ENST00000400345
34
ENSE00001649725
chr18:
56057878-56057974
97
NED4L_HUMAN
886-918
33
1
A:866-898
33
1.35
ENST00000400345
35
ENSE00000914685
chr18:
56058719-56058791
73
NED4L_HUMAN
918-942
25
1
A:898-922
25
1.36
ENST00000400345
36
ENSE00001341470
chr18:
56063399-56068772
5374
NED4L_HUMAN
942-975
34
1
A:922-946
25
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2onia_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Hect, E3 ligase catalytic domain
(12)
Superfamily
:
Hect, E3 ligase catalytic domain
(12)
Family
:
automated matches
(8)
Protein domain
:
automated matches
(8)
Human (Homo sapiens) [TaxId: 9606]
(8)
1a
d2onia_
A:
[
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]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_HECT_2oniA01 (A:649-946)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: HECT]
(8)
Family
:
HECT
(8)
Homo sapiens (Human)
(7)
1a
HECT-2oniA01
A:649-946
[
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]
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Chain A
Asymmetric Unit 1
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Asym.Unit (147 KB)
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