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2ONG
Asym. Unit
Info
Asym.Unit (194 KB)
Biol.Unit 1 (187 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF OF LIMONENE SYNTHASE WITH 2-FLUOROGERANYL DIPHOSPHATE (FGPP).
Authors
:
D. C. Hyatt, B. Youn, R. Croteau, C. Kang
Date
:
23 Jan 07 (Deposition) - 06 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Monoterpene Synthase, Monoterpene Cyclase, Crystal Structure, Geranyl Diphosphate, 2 Fluorogeranyl Diphosphate, Linalyl Diphosphate, 2-Fluorolinalyl Diphosphate, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. C. Hyatt, B. Youn, Y. Zhao, B. Santhamma, R. M. Coates, R. B. Croteau, C. Kang
Structure Of Limonene Synthase, A Simple Model For Terpenoid Cyclase Catalysis.
Proc. Natl. Acad. Sci. Usa V. 104 5360 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 12)
Info
All Hetero Components
1a: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBa)
1b: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBb)
1c: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBc)
1d: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-... (BTBd)
2a: (1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DI... (FPGa)
2b: (1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DI... (FPGb)
3a: MANGANESE (II) ION (MNa)
3b: MANGANESE (II) ION (MNb)
3c: MANGANESE (II) ION (MNc)
3d: MANGANESE (II) ION (MNd)
3e: MANGANESE (II) ION (MNe)
3f: MANGANESE (II) ION (MNf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
BTB
4
Ligand/Ion
2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2
FPG
2
Ligand/Ion
(1S)-1-[(1R)-1-FLUOROETHYL]-1,5-DIMETHYLHEXYLTRIHYDROGEN DIPHOSPHATE
3
MN
6
Ligand/Ion
MANGANESE (II) ION
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:352 , ASP B:356 , FPG B:1600 , MN B:1602
BINDING SITE FOR RESIDUE MN B 1601
02
AC2
SOFTWARE
ASP B:352 , ASP B:356 , FPG B:1600 , MN B:1601
BINDING SITE FOR RESIDUE MN B 1602
03
AC3
SOFTWARE
ASP B:496 , THR B:500 , FPG B:1600
BINDING SITE FOR RESIDUE MN B 1603
04
AC4
SOFTWARE
ASP A:352 , ASP A:356 , ASP A:509 , FPG A:600 , HOH A:739
BINDING SITE FOR RESIDUE MN A 601
05
AC5
SOFTWARE
ASP A:352 , ASP A:356 , ARG A:507 , ASP A:509 , FPG A:600
BINDING SITE FOR RESIDUE MN A 602
06
AC6
SOFTWARE
ASP A:496 , THR A:500 , FPG A:600
BINDING SITE FOR RESIDUE MN A 603
07
AC7
SOFTWARE
ARG A:315 , ASN A:345 , ILE A:348 , ASP A:352 , ASP A:356 , ILE A:453 , MET A:458 , ARG A:493 , ASP A:496 , LYS A:512 , TYR A:573 , HIS A:579 , MN A:601 , MN A:602 , MN A:603
BINDING SITE FOR RESIDUE FPG A 600
08
AC8
SOFTWARE
GLU A:443 , LEU A:446 , ARG A:486 , PHE A:490 , LEU A:535 , GLU A:538 , LYS A:542
BINDING SITE FOR RESIDUE BTB A 604
09
AC9
SOFTWARE
GLU A:226
BINDING SITE FOR RESIDUE BTB A 605
10
BC1
SOFTWARE
ARG B:315 , TRP B:324 , THR B:349 , ASP B:352 , ASP B:356 , SER B:452 , ILE B:453 , ARG B:493 , ASP B:496 , THR B:500 , LYS B:512 , TYR B:573 , HIS B:579 , MN B:1601 , MN B:1602 , MN B:1603
BINDING SITE FOR RESIDUE FPG B 1600
11
BC2
SOFTWARE
GLU B:443 , LEU B:535 , LYS B:542
BINDING SITE FOR RESIDUE BTB B 1604
12
BC3
SOFTWARE
ARG B:218
BINDING SITE FOR RESIDUE BTB B 1605
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2onga1 (A:57-271)
1b: SCOP_d2ongb1 (B:57-271)
2a: SCOP_d2onga2 (A:272-599)
2b: SCOP_d2ongb2 (B:272-599)
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Protein Domains
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Organisms
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)
(
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Class
:
All alpha proteins
(14657)
Fold
:
alpha/alpha toroid
(324)
Superfamily
:
Terpenoid cyclases/Protein prenyltransferases
(151)
Family
:
automated matches
(13)
Protein domain
:
automated matches
(13)
Mentha spicata [TaxId: 29719]
(2)
1a
d2onga1
A:57-271
1b
d2ongb1
B:57-271
Fold
:
Terpenoid synthases
(196)
Superfamily
:
Terpenoid synthases
(196)
Family
:
automated matches
(68)
Protein domain
:
automated matches
(68)
Mentha spicata [TaxId: 29719]
(2)
2a
d2onga2
A:272-599
2b
d2ongb2
B:272-599
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Terpene_synth_2ongB01 (B:68-246)
1b: PFAM_Terpene_synth_2ongB02 (B:68-246)
2a: PFAM_Terpene_synth_C_2ongB03 (B:276-544)
2b: PFAM_Terpene_synth_C_2ongB04 (B:276-544)
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Clan
:
no clan defined [family: Terpene_synth]
(17)
Family
:
Terpene_synth
(17)
Mentha spicata (Spearmint)
(1)
1a
Terpene_synth-2ongB01
B:68-246
1b
Terpene_synth-2ongB02
B:68-246
Clan
:
no clan defined [family: Terpene_synth_C]
(19)
Family
:
Terpene_synth_C
(19)
Mentha spicata (Spearmint)
(1)
2a
Terpene_synth_C-2ongB03
B:276-544
2b
Terpene_synth_C-2ongB04
B:276-544
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Asym.Unit (194 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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