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2OMT
Asym. Unit
Info
Asym.Unit (110 KB)
Biol.Unit 1 (104 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF INLA G194S+S/HEC1 COMPLEX
Authors
:
T. Wollert, D. W. Heinz, W. D. Schubert
Date
:
23 Jan 07 (Deposition) - 28 Aug 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Leucine-Rich-Repeat, Invasion Protein, Ig-Like Domain, Adhesion Protein, Cell Invasion-Cell Adhesion Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. Wollert, D. W. Heinz, W. D. Schubert
Thermodynamically Reengineering The Listerial Invasion Complex Inla/E-Cadherin.
Proc. Natl. Acad. Sci. Usa V. 104 13960 2007
[
close entry info
]
Hetero Components
(2, 2)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: CHLORIDE ION (CLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CL
1
Ligand/Ion
CHLORIDE ION
[
close Hetero Component info
]
Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:327 , HOH A:996 , HOH A:1040 , LYS B:25 , HOH B:122 , HOH B:140
BINDING SITE FOR RESIDUE CA A 601
2
AC2
SOFTWARE
ASN A:326 , HOH A:707 , LYS B:25 , HOH B:199
BINDING SITE FOR RESIDUE CL A 602
[
close Site info
]
SAPs(SNPs)/Variants
(17, 17)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_001307 (T39P, chain B, )
02: VAR_INLA_LISMO_003 (T51A, chain A, )
03: VAR_008712 (D90G, chain B, )
04: VAR_INLA_LISMO_004 (V94L, chain A, )
05: VAR_INLA_LISMO_005 (N118D, chain A, )
06: VAR_INLA_LISMO_006 (T142S, chain A, )
07: VAR_INLA_LISMO_007 (S187N, chain A, )
08: VAR_INLA_LISMO_008 (F193L, chain A, )
09: VAR_INLA_LISMO_009 (L254W, chain A, )
10: VAR_INLA_LISMO_010 (S293P, chain A, )
11: VAR_INLA_LISMO_011 (S293R, chain A, )
12: VAR_INLA_LISMO_012 (N322S, chain A, )
13: VAR_INLA_LISMO_013 (N382S, chain A, )
14: VAR_INLA_LISMO_014 (A417E, chain A, )
15: VAR_INLA_LISMO_015 (T455A, chain A, )
16: VAR_INLA_LISMO_016 (S475N, chain A, )
17: VAR_INLA_LISMO_017 (P477S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_001307
T
193
P
CADH1_HUMAN
Unclassified
---
B
T
39
P
02
UniProt
VAR_INLA_LISMO_003
*
T
51
A
INLA_LISMO
---
---
A
T
51
A
03
UniProt
VAR_008712
D
244
G
CADH1_HUMAN
Disease (HDGC)
---
B
D
90
G
04
UniProt
VAR_INLA_LISMO_004
*
V
94
L
INLA_LISMO
---
---
A
V
94
L
05
UniProt
VAR_INLA_LISMO_005
*
N
118
D
INLA_LISMO
---
---
A
N
118
D
06
UniProt
VAR_INLA_LISMO_006
*
T
142
S
INLA_LISMO
---
---
A
T
142
S
07
UniProt
VAR_INLA_LISMO_007
*
S
187
N
INLA_LISMO
---
---
A
S
187
N
08
UniProt
VAR_INLA_LISMO_008
*
F
193
L
INLA_LISMO
---
---
A
F
193
L
09
UniProt
VAR_INLA_LISMO_009
*
L
253
W
INLA_LISMO
---
---
A
L
254
W
10
UniProt
VAR_INLA_LISMO_010
*
S
292
P
INLA_LISMO
---
---
A
S
293
P
11
UniProt
VAR_INLA_LISMO_011
*
S
292
R
INLA_LISMO
---
---
A
S
293
R
12
UniProt
VAR_INLA_LISMO_012
*
N
321
S
INLA_LISMO
---
---
A
N
322
S
13
UniProt
VAR_INLA_LISMO_013
*
N
381
S
INLA_LISMO
---
---
A
N
382
S
14
UniProt
VAR_INLA_LISMO_014
*
A
416
E
INLA_LISMO
---
---
A
A
417
E
15
UniProt
VAR_INLA_LISMO_015
*
T
454
A
INLA_LISMO
---
---
A
T
455
A
16
UniProt
VAR_INLA_LISMO_016
*
S
474
N
INLA_LISMO
---
---
A
S
475
N
17
UniProt
VAR_INLA_LISMO_017
*
P
476
S
INLA_LISMO
---
---
A
P
477
S
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(3, 18)
Info
All PROSITE Patterns/Profiles
1: LRR (A:99-120|A:77-98|A:121-142|A:143-1...)
2: CADHERIN_2 (B:26-101|-|-|-|-)
3: CADHERIN_1 (B:96-101|-|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
INLA_LISM4
99-120
77-98
121-142
143-164
165-186
187-207
208-229
230-251
252-273
274-295
296-317
318-339
340-361
362-383
384-405
15
A:99-120
A:77-98
A:121-142
A:143-164
A:165-186
A:188-208
A:209-230
A:231-252
A:253-274
A:275-296
A:297-318
A:319-340
A:341-362
A:363-384
A:385-406
INLA_LISMO
99-120
121-142
143-164
165-186
187-207
208-229
230-251
252-273
274-295
296-317
318-339
340-361
362-383
384-405
14
A:99-120
A:121-142
A:143-164
A:165-186
A:187-208
A:209-230
A:231-252
A:253-274
A:275-296
A:297-318
A:319-340
A:341-362
A:363-384
A:385-406
2
CADHERIN_2
PS50268
Cadherins domain profile.
CADH1_HUMAN
180-262
263-375
376-486
487-595
594-702
1
B:26-101
-
-
-
-
3
CADHERIN_1
PS00232
Cadherin domain signature.
CADH1_HUMAN
250-260
363-373
583-593
1
B:96-101
-
-
[
close PROSITE info
]
Exons
(3, 3)
Info
All Exons
Exon 1.4b (B:-3-23 (gaps))
Exon 1.5 (B:24-75)
Exon 1.6 (B:76-101)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.3b/1.4b
2: Boundary 1.4b/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000261769
1a
ENSE00001859184
chr16:
68771128-68771366
239
CADH1_HUMAN
1-16
16
0
-
-
1.2
ENST00000261769
2
ENSE00000844392
chr16:
68772200-68772314
115
CADH1_HUMAN
17-55
39
0
-
-
1.3b
ENST00000261769
3b
ENSE00000946584
chr16:
68835573-68835796
224
CADH1_HUMAN
55-129
75
0
-
-
1.4b
ENST00000261769
4b
ENSE00000946585
chr16:
68842327-68842470
144
CADH1_HUMAN
130-177
48
1
B:-3-23 (gaps)
32
1.5
ENST00000261769
5
ENSE00000946586
chr16:
68842596-68842751
156
CADH1_HUMAN
178-229
52
1
B:24-75
52
1.6
ENST00000261769
6
ENSE00000946587
chr16:
68844100-68844244
145
CADH1_HUMAN
230-278
49
1
B:76-101
26
1.7
ENST00000261769
7
ENSE00000946588
chr16:
68845587-68845762
176
CADH1_HUMAN
278-336
59
0
-
-
1.8
ENST00000261769
8
ENSE00000946589
chr16:
68846038-68846166
129
CADH1_HUMAN
337-379
43
0
-
-
1.9
ENST00000261769
9
ENSE00000946590
chr16:
68847216-68847398
183
CADH1_HUMAN
380-440
61
0
-
-
1.11
ENST00000261769
11
ENSE00002191003
chr16:
68849418-68849662
245
CADH1_HUMAN
441-522
82
0
-
-
1.12
ENST00000261769
12
ENSE00001694152
chr16:
68853183-68853328
146
CADH1_HUMAN
522-571
50
0
-
-
1.13
ENST00000261769
13
ENSE00001754940
chr16:
68855904-68856128
225
CADH1_HUMAN
571-646
76
0
-
-
1.14
ENST00000261769
14
ENSE00001721514
chr16:
68857302-68857529
228
CADH1_HUMAN
646-722
77
0
-
-
1.15
ENST00000261769
15
ENSE00001736533
chr16:
68862077-68862207
131
CADH1_HUMAN
722-765
44
0
-
-
1.16
ENST00000261769
16
ENSE00001782571
chr16:
68863557-68863700
144
CADH1_HUMAN
766-813
48
0
-
-
1.17b
ENST00000261769
17b
ENSE00001930498
chr16:
68867193-68869437
2245
CADH1_HUMAN
814-882
69
0
-
-
[
close EXON info
]
SCOP Domains
(3, 3)
Info
All SCOP Domains
1a: SCOP_d2omtb_ (B:)
2a: SCOP_d2omta1 (A:418-497)
3a: SCOP_d2omta3 (A:36-417)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Cadherin-like
(44)
Family
:
Cadherin
(30)
Protein domain
:
E-cadherin (epithelial)
(23)
Human (Homo sapiens) [TaxId: 9606]
(10)
1a
d2omtb_
B:
Superfamily
:
E set domains
(509)
Family
:
Internalin Ig-like domain
(13)
Protein domain
:
Internalin A
(10)
Listeria monocytogenes [TaxId: 1639]
(10)
2a
d2omta1
A:418-497
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
Internalin LRR domain
(22)
Protein domain
:
Internalin A
(10)
Listeria monocytogenes [TaxId: 1639]
(10)
3a
d2omta3
A:36-417
[
close SCOP info
]
CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2omtA01 (A:36-415)
2a: CATH_2omtA02 (A:416-497)
3a: CATH_2omtB00 (B:-3-101)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Horseshoe
(92)
Topology
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(73)
Homologous Superfamily
:
Ribonuclease Inhibitor
(73)
Listeria monocytogenes egd-e. Organism_taxid: 169963. Strain: egd-e.
(7)
1a
2omtA01
A:36-415
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.1220, no name defined]
(28)
Listeria monocytogenes egd-e. Organism_taxid: 169963. Strain: egd-e.
(7)
2a
2omtA02
A:416-497
Homologous Superfamily
:
Cadherins
(28)
Listeria monocytogenes egd-e. Organism_taxid: 169963. Strain: egd-e.
(7)
3a
2omtB00
B:-3-101
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Cadherin_2omtB01 (B:5-99)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
Cadherin
(41)
Homo sapiens (Human)
(10)
1a
Cadherin-2omtB01
B:5-99
[
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]
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