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2OM9
Biol. Unit 1
Info
Asym.Unit (365 KB)
Biol.Unit 1 (94 KB)
Biol.Unit 2 (91 KB)
Biol.Unit 3 (93 KB)
Biol.Unit 4 (91 KB)
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(1)
Title
:
AJULEMIC ACID, A SYNTHETIC CANNABINOID BOUND TO PPAR GAMMA
Authors
:
A. L. B. Ambrosio, R. C. Garratt
Date
:
21 Jan 07 (Deposition) - 24 Apr 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Ppar Gamma, Ajulemic Acid, Cannabinoid, Partial Agonist, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. L. B. Ambrosio, S. M. G. Dias, I. Polikarpov, R. B. Zurier, S. H. Burstein, R. C. Garratt
Ajulemic Acid, A Synthetic Nonpsychoactive Cannabinoid Acid, Bound To The Ligand Binding Domain Of The Human Peroxisome Proliferator-Activated Receptor Gamma
J. Biol. Chem. V. 282 18625 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAa)
1b: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAb)
1c: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAc)
1d: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAd)
1e: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAe)
1f: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAf)
1g: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAg)
1h: (6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-... (AJAh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
AJA
2
Ligand/Ion
(6AR,10AR)-3-(1,1-DIMETHYLHEPTYL)-1-HYDROXY-6,6-DIMETHYL-6A,7,10,10A-TETRAHYDRO-6H-BENZO[C]CHROMENE-9-CARBOXYLIC ACID
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC4 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:264 , LYS A:265 , HIS A:266 , CYS A:285 , ARG A:288 , VAL A:339 , SER A:342 , MET A:348 , LEU A:353
BINDING SITE FOR RESIDUE AJA A 501
2
AC2
SOFTWARE
LYS A:301 , GLN A:314 , VAL A:315 , LEU A:318 , AJA A:602 , VAL B:290 , GLN B:294 , HIS B:466 , LEU B:468
BINDING SITE FOR RESIDUE AJA B 502
3
AC4
SOFTWARE
HOH A:61 , HOH A:155 , VAL A:290 , HIS A:466 , PRO A:467 , LEU A:468 , LYS B:301 , LEU B:311 , VAL B:315 , AJA B:502
BINDING SITE FOR RESIDUE AJA A 602
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_010725 (Q286P, chain A, )
2: VAR_010726 (R288H, chain A, )
3: VAR_010727 (V290M, chain A, )
4: VAR_022700 (F360L, chain A, )
5: VAR_022701 (R397C, chain A, )
6: VAR_010728 (P467L, chain A, )
View:
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_010725
Q
314
P
PPARG_HUMAN
Unclassified
28936407
A
Q
286
P
2
UniProt
VAR_010726
R
316
H
PPARG_HUMAN
Unclassified
28936407
A
R
288
H
3
UniProt
VAR_010727
V
318
M
PPARG_HUMAN
Unclassified
---
A
V
290
M
4
UniProt
VAR_022700
F
388
L
PPARG_HUMAN
Disease (FPLD3)
---
A
F
360
L
5
UniProt
VAR_022701
R
425
C
PPARG_HUMAN
Disease (FPLD3)
---
A
R
397
C
6
UniProt
VAR_010728
P
495
L
PPARG_HUMAN
Unclassified
---
A
P
467
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2om9a_ (A:)
1b: SCOP_d2om9b_ (B:)
1c: SCOP_d2om9c_ (C:)
1d: SCOP_d2om9d_ (D:)
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Class
:
All alpha proteins
(14657)
Fold
:
Nuclear receptor ligand-binding domain
(609)
Superfamily
:
Nuclear receptor ligand-binding domain
(609)
Family
:
Nuclear receptor ligand-binding domain
(598)
Protein domain
:
automated matches
(140)
Human (Homo sapiens) [TaxId: 9606]
(122)
1a
d2om9a_
A:
1b
d2om9b_
B:
1c
d2om9c_
C:
1d
d2om9d_
D:
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_2om9B00 (B:207-476)
1b: CATH_2om9D00 (D:207-476)
1c: CATH_2om9A00 (A:207-476)
1d: CATH_2om9C00 (C:207-476)
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Organisms
(
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Retinoid X Receptor
(409)
Homologous Superfamily
:
Retinoid X Receptor
(409)
Human (Homo sapiens)
(337)
1a
2om9B00
B:207-476
1b
2om9D00
D:207-476
1c
2om9A00
A:207-476
1d
2om9C00
C:207-476
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Hormone_recep_2om9D01 (D:266-463)
1b: PFAM_Hormone_recep_2om9D02 (D:266-463)
1c: PFAM_Hormone_recep_2om9D03 (D:266-463)
1d: PFAM_Hormone_recep_2om9D04 (D:266-463)
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Clan
:
no clan defined [family: Hormone_recep]
(290)
Family
:
Hormone_recep
(290)
Homo sapiens (Human)
(244)
1a
Hormone_recep-2om9D01
D:266-463
1b
Hormone_recep-2om9D02
D:266-463
1c
Hormone_recep-2om9D03
D:266-463
1d
Hormone_recep-2om9D04
D:266-463
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Show PDB file:
Asym.Unit (365 KB)
Header - Asym.Unit
Biol.Unit 1 (94 KB)
Header - Biol.Unit 1
Biol.Unit 2 (91 KB)
Header - Biol.Unit 2
Biol.Unit 3 (93 KB)
Header - Biol.Unit 3
Biol.Unit 4 (91 KB)
Header - Biol.Unit 4
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