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2OM2
Asym. Unit
Info
Asym.Unit (128 KB)
Biol.Unit 1 (63 KB)
Biol.Unit 2 (63 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN G[ALPHA]I1 BOUND TO THE GOLOCO MOTIF OF RGS14
Authors
:
D. P. Siderovski, R. J. Kimple
Date
:
20 Jan 07 (Deposition) - 10 Jul 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Arginine Finger, Rgs14 Goloco, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. W. Sammond, Z. M. Eletr, C. Purbeck, R. J. Kimple, D. P. Siderovski, B. Kuhlman
Structure-Based Protocol For Identifying Mutations That Enhance Protein-Protein Binding Affinities.
J. Mol. Biol. V. 371 1392 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
1b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
2a: MAGNESIUM ION (MGa)
2b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
2
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GDP A:355 , HOH A:4062 , HOH B:4158
BINDING SITE FOR RESIDUE MG A 800
2
AC2
SOFTWARE
GDP C:356 , LYS C:1046 , ASP C:1200 , GLY C:1202
BINDING SITE FOR RESIDUE MG C 801
3
AC3
SOFTWARE
ALA A:41 , GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , ASP A:150 , SER A:151 , ARG A:176 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , MG A:800 , HOH A:4032 , HOH A:4089 , HOH A:4120 , ARG B:516
BINDING SITE FOR RESIDUE GDP A 355
4
AC4
SOFTWARE
MG C:801 , ALA C:1041 , GLY C:1042 , GLU C:1043 , SER C:1044 , GLY C:1045 , LYS C:1046 , SER C:1047 , THR C:1048 , ASP C:1150 , SER C:1151 , ARG C:1176 , ARG C:1178 , ASN C:1269 , LYS C:1270 , ASP C:1272 , LEU C:1273 , CYS C:1325 , ALA C:1326 , THR C:1327 , HOH C:4086 , HOH C:4087 , HOH C:4108 , ARG D:1516
BINDING SITE FOR RESIDUE GDP C 356
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: GOLOCO (B:497-519,D:1497-1519)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GOLOCO
PS50877
GoLoco/GPR motif profile.
RGS14_HUMAN
498-520
2
B:497-519
D:1497-1519
[
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Exons
(8, 16)
Info
All Exons
Exon 1.4a (A:30-40 | C:1030-1040)
Exon 1.8 (A:40-54 | C:1040-1054)
Exon 1.9b (A:54-101 | C:1054-1101)
Exon 1.10 (A:102-154 | C:1102-1154)
Exon 1.11 (A:154-197 | C:1154-1197)
Exon 1.12 (A:197-240 | C:1197-1240)
Exon 1.13 (A:241-292 | C:1241-1292)
Exon 1.14b (A:292-349 | C:1292-1347)
View:
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All Exon Boundaries
1: Boundary -/1.4a
2: Boundary 1.4a/1.8
3: Boundary 1.8/1.9b
4: Boundary 1.9b/1.10
5: Boundary 1.10/1.11
6: Boundary 1.11/1.12
7: Boundary 1.12/1.13
8: Boundary 1.13/1.14b
9: Boundary 1.14b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.4a
ENST00000351004
4a
ENSE00001371927
chr7:
79764104-79764594
491
GNAI1_HUMAN
1-40
40
2
A:30-40
C:1030-1040
11
11
1.8
ENST00000351004
8
ENSE00001626524
chr7:
79818267-79818309
43
GNAI1_HUMAN
40-54
15
2
A:40-54
C:1040-1054
15
15
1.9b
ENST00000351004
9b
ENSE00001129655
chr7:
79818406-79818547
142
GNAI1_HUMAN
54-101
48
2
A:54-101
C:1054-1101
48
48
1.10
ENST00000351004
10
ENSE00000877050
chr7:
79828541-79828698
158
GNAI1_HUMAN
102-154
53
2
A:102-154
C:1102-1154
53
53
1.11
ENST00000351004
11
ENSE00002174891
chr7:
79833020-79833148
129
GNAI1_HUMAN
154-197
44
2
A:154-197
C:1154-1197
44
44
1.12
ENST00000351004
12
ENSE00001369917
chr7:
79840285-79840414
130
GNAI1_HUMAN
197-240
44
2
A:197-240
C:1197-1240
44
44
1.13
ENST00000351004
13
ENSE00001591517
chr7:
79842032-79842185
154
GNAI1_HUMAN
241-292
52
2
A:241-292
C:1241-1292
52
52
1.14b
ENST00000351004
14b
ENSE00001303419
chr7:
79846619-79848718
2100
GNAI1_HUMAN
292-354
63
2
A:292-349
C:1292-1347
58
56
[
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]
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2om2a1 (A:61-181)
1b: SCOP_d2om2c1 (C:1061-1181)
2a: SCOP_d2om2a2 (A:30-60,A:182-349)
2b: SCOP_d2om2c2 (C:1030-1060,C:1182-1347)
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Protein Domains
(
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
Transducin (alpha subunit), insertion domain
(49)
Superfamily
:
Transducin (alpha subunit), insertion domain
(49)
Family
:
Transducin (alpha subunit), insertion domain
(49)
Protein domain
:
Transducin (alpha subunit), insertion domain
(49)
Human (Homo sapiens) [TaxId: 9606]
(7)
1a
d2om2a1
A:61-181
1b
d2om2c1
C:1061-1181
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
G proteins
(693)
Protein domain
:
Transducin (alpha subunit)
(51)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d2om2a2
A:30-60,A:182-349
2b
d2om2c2
C:1030-1060,C:1182-1347
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2om2A01 (A:34-61,A:181-343)
1b: CATH_2om2C01 (C:1034-1061,C:1181-1343)
2a: CATH_2om2A02 (A:62-180)
2b: CATH_2om2C02 (C:1062-1180)
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Organisms
(
)
(
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Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2om2A01
A:34-61,A:181-343
1b
2om2C01
C:1034-1061,C:1181-1343
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Human (Homo sapiens)
(13)
2a
2om2A02
A:62-180
2b
2om2C02
C:1062-1180
[
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_G_alpha_2om2C01 (C:1031-1347)
1b: PFAM_G_alpha_2om2C02 (C:1031-1347)
2a: PFAM_GoLoco_2om2D01 (D:1497-1519)
2b: PFAM_GoLoco_2om2D02 (D:1497-1519)
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Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Homo sapiens (Human)
(6)
1a
G-alpha-2om2C01
C:1031-1347
1b
G-alpha-2om2C02
C:1031-1347
Clan
:
no clan defined [family: GoLoco]
(3)
Family
:
GoLoco
(3)
Homo sapiens (Human)
(3)
2a
GoLoco-2om2D01
D:1497-1519
2b
GoLoco-2om2D02
D:1497-1519
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