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2OLM
Asym. Unit
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Asym.Unit (30 KB)
Biol.Unit 1 (49 KB)
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(1)
Title
:
ARFGAP DOMAIN OF HIV-1 REV BINDING PROTEIN
Authors
:
Y. Tong, W. Tempel, L. Shen, S. Dimov, R. Landry, C. H. Arrowsmith, A. M. E M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomic Consortium (Sgc)
Date
:
19 Jan 07 (Deposition) - 30 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.48
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Arfgap, Gtpase-Activating Protein, Rev-Interacting Protein, Hiv, Human Immunodeficiency Virus, Aids, Nucleoporin, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase Regulator
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Tong, W. Tempel, L. Shen, S. Dimov, R. Landry, C. H. Arrowsmith, A. M. Edwards, M. Sundstrom, J. Weigelt, A. Bochkarev, H. Park, Structural Genomics Consortium (Sgc)
Arfgap Domain Of Hiv-1 Rev Binding Protein
To Be Published
[
close entry info
]
Hetero Components
(5, 14)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
3a: UNKNOWN LIGAND (UNLa)
4a: UNKNOWN ATOM OR ION (UNXa)
4b: UNKNOWN ATOM OR ION (UNXb)
4c: UNKNOWN ATOM OR ION (UNXc)
4d: UNKNOWN ATOM OR ION (UNXd)
4e: UNKNOWN ATOM OR ION (UNXe)
4f: UNKNOWN ATOM OR ION (UNXf)
4g: UNKNOWN ATOM OR ION (UNXg)
4h: UNKNOWN ATOM OR ION (UNXh)
4i: UNKNOWN ATOM OR ION (UNXi)
5a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
SO4
2
Ligand/Ion
SULFATE ION
3
UNL
1
Ligand/Ion
UNKNOWN LIGAND
4
UNX
9
Ligand/Ion
UNKNOWN ATOM OR ION
5
ZN
1
Ligand/Ion
ZINC ION
[
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Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS A:29 , CYS A:32 , CYS A:49 , CYS A:52
BINDING SITE FOR RESIDUE ZN A 201
02
AC2
SOFTWARE
ARG A:64 , THR A:71 , SER A:102 , ALA A:103 , ARG A:125 , TRP A:126 , UNX A:1007 , HOH A:2025 , HOH A:2060
BINDING SITE FOR RESIDUE SO4 A 2001
03
AC3
SOFTWARE
LYS A:8 , PRO A:24 , ARG A:27
BINDING SITE FOR RESIDUE SO4 A 2002
04
AC4
SOFTWARE
THR A:43 , PRO A:61 , PRO A:62
BINDING SITE FOR RESIDUE UNL A 202
05
AC5
SOFTWARE
THR A:72
BINDING SITE FOR RESIDUE UNX A 1001
06
AC6
SOFTWARE
HIS A:13 , THR A:74 , GLN A:75
BINDING SITE FOR RESIDUE UNX A 1002
07
AC7
SOFTWARE
TYR A:127
BINDING SITE FOR RESIDUE UNX A 1003
08
AC8
SOFTWARE
SER A:101
BINDING SITE FOR RESIDUE UNX A 1004
09
AC9
SOFTWARE
VAL A:44 , TRP A:93
BINDING SITE FOR RESIDUE UNX A 1005
10
BC1
SOFTWARE
TRP A:93 , LYS A:120 , LYS A:124 , ARG A:125 , TRP A:126 , TYR A:127
BINDING SITE FOR RESIDUE UNX A 1006
11
BC2
SOFTWARE
LYS A:66 , SO4 A:2001
BINDING SITE FOR RESIDUE UNX A 1007
12
BC3
SOFTWARE
GLU A:11 , LYS A:12 , ARG A:18 , HOH A:2034
BINDING SITE FOR RESIDUE UNX A 1008
13
BC4
SOFTWARE
ARG A:18 , HOH A:2067
BINDING SITE FOR RESIDUE UNX A 1009
14
BC5
SOFTWARE
ARG A:57 , PRO A:62 , PHE A:80 , PHE A:97 , ASP A:98 , ASP A:99 , HOH A:2069 , HOH A:2077
BINDING SITE FOR RESIDUE GOL A 203
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ARFGAP (A:11-135)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ARFGAP
PS50115
ARF GTPase-activating proteins domain profile.
AGFG1_HUMAN
11-135
1
A:11-135
[
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Exons
(4, 4)
Info
All Exons
Exon 1.1b (A:3-56)
Exon 1.2 (A:56-87)
Exon 1.5 (A:88-126)
Exon 1.6 (A:126-135)
View:
Select:
Label:
All Exon Boundaries
1: Boundary -/1.1b
2: Boundary 1.1b/1.2
3: Boundary 1.2/1.5
4: Boundary 1.5/1.6
5: Boundary 1.6/1.7b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000310078
1b
ENSE00001855491
chr2:
228336878-228337304
427
AGFG1_HUMAN
1-56
56
1
A:3-56
54
1.2
ENST00000310078
2
ENSE00001183976
chr2:
228356263-228356356
94
AGFG1_HUMAN
56-87
32
1
A:56-87
32
1.5
ENST00000310078
5
ENSE00001183971
chr2:
228384664-228384779
116
AGFG1_HUMAN
88-126
39
1
A:88-126
39
1.6
ENST00000310078
6
ENSE00001183968
chr2:
228388479-228388641
163
AGFG1_HUMAN
126-180
55
1
A:126-135
10
1.7b
ENST00000310078
7b
ENSE00001183965
chr2:
228389478-228389631
154
AGFG1_HUMAN
181-232
52
0
-
-
1.8
ENST00000310078
8
ENSE00001183964
chr2:
228395807-228395926
120
AGFG1_HUMAN
232-272
41
0
-
-
1.10b
ENST00000310078
10b
ENSE00001183961
chr2:
228398265-228398474
210
AGFG1_HUMAN
272-342
71
0
-
-
1.11a
ENST00000310078
11a
ENSE00001183955
chr2:
228399561-228399741
181
AGFG1_HUMAN
342-402
61
0
-
-
1.12
ENST00000310078
12
ENSE00001183952
chr2:
228401341-228401420
80
AGFG1_HUMAN
402-429
28
0
-
-
1.13a
ENST00000310078
13a
ENSE00001183950
chr2:
228401617-228401709
93
AGFG1_HUMAN
429-460
32
0
-
-
1.15
ENST00000310078
15
ENSE00001183947
chr2:
228416675-228416833
159
AGFG1_HUMAN
460-513
54
0
-
-
1.16a
ENST00000310078
16a
ENSE00001183943
chr2:
228418420-228418511
92
AGFG1_HUMAN
513-543
31
0
-
-
1.17e
ENST00000310078
17e
ENSE00001882126
chr2:
228419152-228421384
2233
AGFG1_HUMAN
544-562
19
0
-
-
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_ArfGap_2olmA01 (A:14-130)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: ArfGap]
(6)
Family
:
ArfGap
(6)
Homo sapiens (Human)
(6)
1a
ArfGap-2olmA01
A:14-130
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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