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Getting 'Exon' information from database.
2OKR
Asym. Unit
Info
Asym.Unit (126 KB)
Biol.Unit 1 (62 KB)
Biol.Unit 2 (62 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE P38A-MAPKAP KINASE 2 HETERODIMER
Authors
:
E. Ter Haar
Date
:
17 Jan 07 (Deposition) - 06 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,C,D,F
Biol. Unit 1: A,C (1x)
Biol. Unit 2: D,F (1x)
Keywords
:
Kinase, Nls, Nes, Heterodimer, Docking Groove, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Ter Haar, P. Prabakhar, X. Liu, C. Lepre
Crystal Structure Of The P38Alpha-Mapkap Kinase 2 Heterodimer.
J. Biol. Chem. V. 282 9733 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(3, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_042270 (A51V, chain A/D, )
2: VAR_042271 (P322R, chain A/D, )
3: VAR_042272 (D343G, chain A/D, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_042270
A
51
V
MK14_HUMAN
Unclassified
---
A/D
A
51
V
2
UniProt
VAR_042271
P
322
R
MK14_HUMAN
Unclassified
---
A/D
P
322
R
3
UniProt
VAR_042272
D
343
G
MK14_HUMAN
Polymorphism
45496794
A/D
D
343
G
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: PROTEIN_KINASE_ATP (A:30-54,D:30-54)
2: MAPK (A:59-162,D:59-162)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PROTEIN_KINASE_ATP
PS00107
Protein kinases ATP-binding region signature.
MK14_HUMAN
30-54
2
A:30-54
D:30-54
2
MAPK
PS01351
MAP kinase signature.
MK14_HUMAN
59-162
2
A:59-162
D:59-162
[
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]
Exons
(13, 26)
Info
All Exons
Exon 1.1b (A:4-39 | D:5-39)
Exon 1.3 (A:39-82 | D:39-82)
Exon 1.4 (A:83-102 | D:83-102)
Exon 1.5 (A:102-139 | D:102-139)
Exon 1.7 (A:140-149 | D:140-149)
Exon 1.8 (A:150-165 | D:150-165)
Exon 1.9b (A:166-204 (gaps) | D:166-204 (gaps...)
Exon 1.10b (A:204-228 | D:204-228)
Exon 1.11a (A:228-254 | D:228-254)
Exon 1.13 (A:255-281 | D:255-281)
Exon 1.14b (A:281-339 | D:281-339)
Exon 1.15c (A:339-352 | D:339-355)
Exon 2.9d (C:1370-1393 | F:1370-1393)
View:
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All Exon Boundaries
01: Boundary -/1.1b
02: Boundary 1.1b/1.3
03: Boundary 1.3/1.4
04: Boundary 1.4/1.5
05: Boundary 1.5/1.7
06: Boundary 1.7/1.8
07: Boundary 1.8/1.9b
08: Boundary 1.9b/1.10b
09: Boundary 1.10b/1.11a
10: Boundary 1.11a/1.13
11: Boundary 1.13/1.14b
12: Boundary 1.14b/1.15c
13: Boundary 1.15c/-
14: Boundary 2.9b/2.9d
15: Boundary 2.9d/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000229794
1b
ENSE00001809695
chr6:
35995547-35996050
504
MK14_HUMAN
1-39
39
2
A:4-39
D:5-39
36
35
1.3
ENST00000229794
3
ENSE00002157398
chr6:
36020476-36020605
130
MK14_HUMAN
39-82
44
2
A:39-82
D:39-82
44
44
1.4
ENST00000229794
4
ENSE00002195466
chr6:
36027066-36027124
59
MK14_HUMAN
83-102
20
2
A:83-102
D:83-102
20
20
1.5
ENST00000229794
5
ENSE00002173328
chr6:
36040650-36040761
112
MK14_HUMAN
102-139
38
2
A:102-139
D:102-139
38
38
1.7
ENST00000229794
7
ENSE00002199098
chr6:
36041468-36041497
30
MK14_HUMAN
140-149
10
2
A:140-149
D:140-149
10
10
1.8
ENST00000229794
8
ENSE00002174022
chr6:
36041826-36041873
48
MK14_HUMAN
150-165
16
2
A:150-165
D:150-165
16
16
1.9b
ENST00000229794
9b
ENSE00002154502
chr6:
36043625-36043739
115
MK14_HUMAN
166-204
39
2
A:166-204 (gaps)
D:166-204 (gaps)
39
39
1.10b
ENST00000229794
10b
ENSE00002189763
chr6:
36044314-36044385
72
MK14_HUMAN
204-228
25
2
A:204-228
D:204-228
25
25
1.11a
ENST00000229794
11a
ENSE00002184355
chr6:
36063764-36063843
80
MK14_HUMAN
228-254
27
2
A:228-254
D:228-254
27
27
1.13
ENST00000229794
13
ENSE00002147851
chr6:
36070348-36070426
79
MK14_HUMAN
255-281
27
2
A:255-281
D:255-281
27
27
1.14b
ENST00000229794
14b
ENSE00002152484
chr6:
36075232-36075405
174
MK14_HUMAN
281-339
59
2
A:281-339
D:281-339
59
59
1.15c
ENST00000229794
15c
ENSE00001919602
chr6:
36076157-36078532
2376
MK14_HUMAN
339-360
22
2
A:339-352
D:339-355
14
17
2.1b
ENST00000367103
1b
ENSE00001825387
chr1:
206858382-206858853
472
MAPK2_HUMAN
1-93
93
0
-
-
2.2
ENST00000367103
2
ENSE00001069545
chr1:
206902055-206902194
140
MAPK2_HUMAN
94-140
47
0
-
-
2.3b
ENST00000367103
3b
ENSE00001069547
chr1:
206902380-206902444
65
MAPK2_HUMAN
140-162
23
0
-
-
2.4b
ENST00000367103
4b
ENSE00001069548
chr1:
206902741-206902820
80
MAPK2_HUMAN
162-188
27
0
-
-
2.5
ENST00000367103
5
ENSE00001069551
chr1:
206903317-206903443
127
MAPK2_HUMAN
189-231
43
0
-
-
2.6
ENST00000367103
6
ENSE00001648220
chr1:
206904033-206904108
76
MAPK2_HUMAN
231-256
26
0
-
-
2.7
ENST00000367103
7
ENSE00001069544
chr1:
206904483-206904607
125
MAPK2_HUMAN
256-298
43
0
-
-
2.8b
ENST00000367103
8b
ENSE00001069550
chr1:
206904985-206905070
86
MAPK2_HUMAN
298-326
29
0
-
-
2.9b
ENST00000367103
9b
ENSE00001069552
chr1:
206905184-206905264
81
MAPK2_HUMAN
327-353
27
0
-
-
2.9d
ENST00000367103
9d
ENSE00001443498
chr1:
206905920-206907628
1709
MAPK2_HUMAN
354-400
47
2
C:1370-1393
F:1370-1393
24
24
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2okra_ (A:)
1b: SCOP_d2okrd_ (D:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Protein kinase-like (PK-like)
(2589)
Superfamily
:
Protein kinase-like (PK-like)
(2589)
Family
:
Protein kinases, catalytic subunit
(1977)
Protein domain
:
MAP kinase p38
(184)
Human (Homo sapiens) [TaxId: 9606]
(162)
1a
d2okra_
A:
1b
d2okrd_
D:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2okrA01 (A:5-110,A:320-349)
1b: CATH_2okrD01 (D:5-110,D:320-349)
2a: CATH_2okrD02 (D:111-319)
2b: CATH_2okrA02 (A:111-319)
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)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Phosphorylase Kinase; domain 1
(1392)
Homologous Superfamily
:
Phosphorylase Kinase; domain 1
(1392)
Human (Homo sapiens)
(1036)
1a
2okrA01
A:5-110,A:320-349
1b
2okrD01
D:5-110,D:320-349
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transferase(Phosphotransferase); domain 1
(1379)
Homologous Superfamily
:
Transferase(Phosphotransferase) domain 1
(1379)
Human (Homo sapiens)
(1049)
2a
2okrD02
D:111-319
2b
2okrA02
A:111-319
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Pkinase_2okrD01 (D:24-308)
1b: PFAM_Pkinase_2okrD02 (D:24-308)
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Clans
(
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(
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
PKinase
(934)
Family
:
Pkinase
(680)
Homo sapiens (Human)
(521)
1a
Pkinase-2okrD01
D:24-308
1b
Pkinase-2okrD02
D:24-308
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