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2OKK
Asym. Unit
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Asym.Unit (85 KB)
Biol.Unit 1 (156 KB)
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(1)
Title
:
THE X-RAY CRYSTAL STRUCTURE OF THE 65KDA ISOFORM OF GLUTAMIC ACID DECARBOXYLASE (GAD65)
Authors
:
A. M. Buckle, G. Fenalti, R. H. P. Law, J. C. Whisstock
Date
:
17 Jan 07 (Deposition) - 27 Mar 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (2x)
Keywords
:
Plp-Dependent Decarboxylase, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Fenalti, R. H. Law, A. M. Buckle, C. Langendorf, K. Tuck, C. J. Rosado N. G. Faux, K. Mahmood, C. S. Hampe, J. P. Banga, M. Wilce, J. Schmidberger, J. Rossjohn, O. El-Kabbani, R. N. Pike, A. I. Smith, I. R. Mackay, M. J. Rowley, J. C. Whisstock
Gaba Production By Glutamic Acid Decarboxylase Is Regulated By A Dynamic Catalytic Loop.
Nat. Struct. Mol. Biol. V. 14 280 2007
[
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Hetero Components
(3, 4)
Info
All Hetero Components
1a: GAMMA-AMINO-BUTANOIC ACID (ABUa)
1b: GAMMA-AMINO-BUTANOIC ACID (ABUb)
2a: GLYCEROL (GOLa)
3a: 2-LYSINE(3-HYDROXY-2-METHYL-5-PHOS... (LLPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ABU
2
Ligand/Ion
GAMMA-AMINO-BUTANOIC ACID
2
GOL
1
Ligand/Ion
GLYCEROL
3
LLP
1
Mod. Amino Acid
2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
[
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]
Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLN A:181 , LEU A:182 , SER A:183 , PHE A:205 , THR A:339 , ARG A:558
BINDING SITE FOR RESIDUE ABU A 585
2
AC2
SOFTWARE
GLN A:181 , LEU A:182 , SER A:183 , ASN A:203 , HIS A:282 , LLP A:396 , CYS A:446 , HOH A:661
BINDING SITE FOR RESIDUE ABU A 586
3
AC3
SOFTWARE
GLU A:279 , SER A:281 , HIS A:282 , PHE A:283 , LYS A:286
BINDING SITE FOR RESIDUE GOL A 587
[
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SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_018822 (K124N, chain A, )
2: VAR_029176 (P153Q, chain A, )
3: VAR_029177 (G232E, chain A, )
4: VAR_018823 (K286R, chain A, )
5: VAR_029178 (G326A, chain A, )
6: VAR_018824 (R375Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_018822
K
124
N
DCE2_HUMAN
Polymorphism
8190600
A
K
124
N
2
UniProt
VAR_029176
P
153
Q
DCE2_HUMAN
Polymorphism
2839672
A
P
153
Q
3
UniProt
VAR_029177
G
232
E
DCE2_HUMAN
Polymorphism
2839673
A
G
232
E
4
UniProt
VAR_018823
K
286
R
DCE2_HUMAN
Polymorphism
8190671
A
K
286
R
5
UniProt
VAR_029178
G
326
A
DCE2_HUMAN
Polymorphism
2839678
A
G
326
A
6
UniProt
VAR_018824
R
375
Q
DCE2_HUMAN
Polymorphism
8190730
A
R
375
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: DDC_GAD_HDC_YDC (A:389-410)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DDC_GAD_HDC_YDC
PS00392
DDC / GAD / HDC / TyrDC pyridoxal-phosphate attachment site.
DCE2_HUMAN
389-410
1
A:389-410
[
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Exons
(14, 14)
Info
All Exons
Exon 1.3 (A:88-96)
Exon 1.5a (A:96-174)
Exon 1.6 (A:174-204)
Exon 1.7a (A:204-242)
Exon 1.8 (A:242-280)
Exon 1.9 (A:281-307)
Exon 1.10 (A:307-325)
Exon 1.11 (A:326-364)
Exon 1.12 (A:365-386)
Exon 1.13 (A:386-412)
Exon 1.14 (A:413-462 (gaps))
Exon 1.15 (A:463-498)
Exon 1.16 (A:499-528 (gaps))
Exon 1.17b (A:529-584)
View:
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All Exon Boundaries
01: Boundary 1.2/1.3
02: Boundary 1.3/1.5a
03: Boundary 1.5a/1.6
04: Boundary 1.6/1.7a
05: Boundary 1.7a/1.8
06: Boundary 1.8/1.9
07: Boundary 1.9/1.10
08: Boundary 1.10/1.11
09: Boundary 1.11/1.12
10: Boundary 1.12/1.13
11: Boundary 1.13/1.14
12: Boundary 1.14/1.15
13: Boundary 1.15/1.16
14: Boundary 1.16/1.17b
15: Boundary 1.17b/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000376261
1a
ENSE00001470077
chr10:
26505236-26505814
579
DCE2_HUMAN
1-26
26
0
-
-
1.2
ENST00000376261
2
ENSE00000926045
chr10:
26506539-26506598
60
DCE2_HUMAN
26-46
21
0
-
-
1.3
ENST00000376261
3
ENSE00000926046
chr10:
26506771-26506920
150
DCE2_HUMAN
46-96
51
1
A:88-96
9
1.5a
ENST00000376261
5a
ENSE00001675938
chr10:
26507972-26508205
234
DCE2_HUMAN
96-174
79
1
A:96-174
79
1.6
ENST00000376261
6
ENSE00001769139
chr10:
26512816-26512906
91
DCE2_HUMAN
174-204
31
1
A:174-204
31
1.7a
ENST00000376261
7a
ENSE00000638362
chr10:
26513468-26513580
113
DCE2_HUMAN
204-242
39
1
A:204-242
39
1.8
ENST00000376261
8
ENSE00000816175
chr10:
26518591-26518706
116
DCE2_HUMAN
242-280
39
1
A:242-280
39
1.9
ENST00000376261
9
ENSE00000926047
chr10:
26534850-26534929
80
DCE2_HUMAN
281-307
27
1
A:281-307
27
1.10
ENST00000376261
10
ENSE00000926048
chr10:
26558048-26558102
55
DCE2_HUMAN
307-325
19
1
A:307-325
19
1.11
ENST00000376261
11
ENSE00000926049
chr10:
26559569-26559685
117
DCE2_HUMAN
326-364
39
1
A:326-364
39
1.12
ENST00000376261
12
ENSE00000926050
chr10:
26562565-26562629
65
DCE2_HUMAN
365-386
22
1
A:365-386
22
1.13
ENST00000376261
13
ENSE00001787496
chr10:
26569938-26570016
79
DCE2_HUMAN
386-412
27
1
A:386-412
27
1.14
ENST00000376261
14
ENSE00000816179
chr10:
26575274-26575423
150
DCE2_HUMAN
413-462
50
1
A:413-462 (gaps)
50
1.15
ENST00000376261
15
ENSE00000816180
chr10:
26581394-26581501
108
DCE2_HUMAN
463-498
36
1
A:463-498
36
1.16
ENST00000376261
16
ENSE00000816181
chr10:
26581831-26581920
90
DCE2_HUMAN
499-528
30
1
A:499-528 (gaps)
30
1.17b
ENST00000376261
17b
ENSE00001738920
chr10:
26589717-26593487
3771
DCE2_HUMAN
529-585
57
1
A:529-584
56
[
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]
SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Label:
Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Pyridoxal_deC_2okkA01 (A:138-509)
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Clans
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Families
(
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(
)
Organisms
(
)
(
)
Clan
:
PLP_aminotran
(240)
Family
:
Pyridoxal_deC
(14)
Homo sapiens (Human)
(3)
1a
Pyridoxal_deC-2okkA01
A:138-509
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