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Asym. Unit
Info
Asym.Unit (132 KB)
Biol.Unit 1 (124 KB)
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(1)
Title
:
HUMAN COMPLEMENT FACTOR B
Authors
:
F. J. Milder, L. Gomes, A. Schouten, B. J. C. Janssen, E. G. Huizinga, R. A W. Hemrika, A. Roos, M. R. Daha, P. Gros
Date
:
16 Jan 07 (Deposition) - 27 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Pro-Enzyme, Serine Protease Domain, Von Willebrand Factor-A Domain, Ccp Domain, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. J. Milder, L. Gomes, A. Schouten, B. J. Janssen, E. G. Huizinga, R. A. Romijn, W. Hemrika, A. Roos, M. R. Daha, P. Gros
Factor B Structure Provides Insights Into Activation Of The Central Protease Of The Complement System.
Nat. Struct. Mol. Biol. V. 14 224 2007
[
close entry info
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Hetero Components
(4, 24)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
2a: GLYCEROL (GOLa)
2b: GLYCEROL (GOLb)
2c: GLYCEROL (GOLc)
2d: GLYCEROL (GOLd)
2e: GLYCEROL (GOLe)
2f: GLYCEROL (GOLf)
2g: GLYCEROL (GOLg)
2h: GLYCEROL (GOLh)
2i: GLYCEROL (GOLi)
2j: GLYCEROL (GOLj)
2k: GLYCEROL (GOLk)
2l: GLYCEROL (GOLl)
2m: GLYCEROL (GOLm)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
1
Ligand/Ion
BETA-D-MANNOSE
2
GOL
13
Ligand/Ion
GLYCEROL
3
MAN
4
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
6
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(24, 24)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:95 , ASN A:97 , NAG A:1098 , HOH A:1424
BINDING SITE FOR RESIDUE NAG A 1097
02
AC2
SOFTWARE
GLN A:706 , NAG A:1097 , BMA A:1099 , MAN A:1100 , MAN A:1101
BINDING SITE FOR RESIDUE NAG A 1098
03
AC3
SOFTWARE
GLU A:182 , NAG A:1098 , MAN A:1100 , MAN A:1103
BINDING SITE FOR RESIDUE BMA A 1099
04
AC4
SOFTWARE
GLY A:183 , NAG A:1098 , BMA A:1099 , MAN A:1101 , MAN A:1102 , HOH A:1512 , HOH A:1546
BINDING SITE FOR RESIDUE MAN A 1100
05
AC5
SOFTWARE
GLU A:72 , ARG A:74 , NAG A:1098 , MAN A:1100
BINDING SITE FOR RESIDUE MAN A 1101
06
AC6
SOFTWARE
LYS A:20 , TYR A:139 , GLY A:183 , GLY A:184 , LYS A:707 , MAN A:1100 , GOL A:1365 , HOH A:1520
BINDING SITE FOR RESIDUE MAN A 1102
07
AC7
SOFTWARE
LYS A:391 , BMA A:1099
BINDING SITE FOR RESIDUE MAN A 1103
08
AC8
SOFTWARE
ASN A:117 , THR A:587 , NAG A:1118 , HOH A:1508
BINDING SITE FOR RESIDUE NAG A 1117
09
AC9
SOFTWARE
NAG A:1117
BINDING SITE FOR RESIDUE NAG A 1118
10
BC1
SOFTWARE
ASN A:260 , ASN A:318
BINDING SITE FOR RESIDUE NAG A 1260
11
BC2
SOFTWARE
ASN A:353 , HOH A:1514
BINDING SITE FOR RESIDUE NAG A 1353
12
BC3
SOFTWARE
ASP A:200 , THR A:201 , PRO A:202 , VAL A:430 , LYS A:431 , ASN A:435
BINDING SITE FOR RESIDUE GOL A 1354
13
BC4
SOFTWARE
ILE A:76 , ASN A:123 , ARG A:125 , PHE A:197 , TYR A:199 , LYS A:431 , HOH A:1591
BINDING SITE FOR RESIDUE GOL A 1355
14
BC5
SOFTWARE
VAL A:152 , GLY A:153 , SER A:161 , THR A:163 , ARG A:177
BINDING SITE FOR RESIDUE GOL A 1356
15
BC6
SOFTWARE
ARG A:92 , ASP A:735 , LEU A:736 , GLY A:737 , HOH A:1399 , HOH A:1444 , HOH A:1600 , HOH A:1601
BINDING SITE FOR RESIDUE GOL A 1357
16
BC7
SOFTWARE
CYS A:590 , LYS A:594 , PHE A:721 , ALA A:740 , ALA A:742
BINDING SITE FOR RESIDUE GOL A 1358
17
BC8
SOFTWARE
TYR A:42 , HIS A:77 , ASP A:195 , PHE A:197 , GOL A:1362
BINDING SITE FOR RESIDUE GOL A 1359
18
BC9
SOFTWARE
GLU A:519 , LEU A:523 , LEU A:561 , LYS A:562 , ILE A:567 , HOH A:1560
BINDING SITE FOR RESIDUE GOL A 1360
19
CC1
SOFTWARE
GLY A:21 , PRO A:38 , PHE A:41 , CYS A:73 , ALA A:665
BINDING SITE FOR RESIDUE GOL A 1361
20
CC2
SOFTWARE
TYR A:42 , TYR A:44 , PRO A:45 , THR A:62 , GLN A:63 , GOL A:1359
BINDING SITE FOR RESIDUE GOL A 1362
21
CC3
SOFTWARE
ASP A:634 , ALA A:711 , HIS A:712 , ARG A:714
BINDING SITE FOR RESIDUE GOL A 1363
22
CC4
SOFTWARE
GLY A:16 , GLU A:18 , ARG A:113 , GLY A:114 , GLN A:129 , HOH A:1461
BINDING SITE FOR RESIDUE GOL A 1364
23
CC5
SOFTWARE
GLY A:136 , GLY A:138 , TYR A:139 , CYS A:140 , SER A:141 , GLY A:184 , MAN A:1102 , HOH A:1661
BINDING SITE FOR RESIDUE GOL A 1365
24
CC6
SOFTWARE
LYS A:556 , GLU A:734
BINDING SITE FOR RESIDUE GOL A 1366
[
close Site info
]
SAPs(SNPs)/Variants
(11, 11)
Info
(mutated residues are not available)
All SNPs/Variants
01: VAR_063659 (S141P, chain A, )
02: VAR_063660 (R178Q, chain A, )
03: VAR_063661 (I217L, chain A, )
04: VAR_063221 (F261L, chain A, )
05: VAR_063222 (K298E, chain A, )
06: VAR_063662 (K298Q, chain A, )
07: VAR_063663 (M433I, chain A, )
08: VAR_063664 (K508R, chain A, )
09: VAR_016277 (K540E, chain A, )
10: VAR_016278 (D626E, chain A, )
11: VAR_006495 (A711S, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
01
UniProt
VAR_063659
S
166
P
CFAB_HUMAN
Disease (AHUS4)
---
A
S
141
P
02
UniProt
VAR_063660
R
203
Q
CFAB_HUMAN
Disease (AHUS4)
---
A
R
178
Q
03
UniProt
VAR_063661
I
242
L
CFAB_HUMAN
Disease (AHUS4)
---
A
I
217
L
04
UniProt
VAR_063221
F
286
L
CFAB_HUMAN
Disease (AHUS4)
---
A
F
261
L
05
UniProt
VAR_063222
K
323
E
CFAB_HUMAN
Disease (AHUS4)
---
A
K
298
E
06
UniProt
VAR_063662
K
323
Q
CFAB_HUMAN
Disease (AHUS4)
---
A
K
298
Q
07
UniProt
VAR_063663
M
458
I
CFAB_HUMAN
Disease (AHUS4)
---
A
M
433
I
08
UniProt
VAR_063664
K
533
R
CFAB_HUMAN
Disease (AHUS4)
---
A
K
508
R
09
UniProt
VAR_016277
K
565
E
CFAB_HUMAN
Polymorphism
4151659
A
K
540
E
10
UniProt
VAR_016278
D
651
E
CFAB_HUMAN
Polymorphism
4151660
A
D
626
E
11
UniProt
VAR_006495
A
736
S
CFAB_HUMAN
Polymorphism
---
A
A
711
S
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(5, 7)
Info
All PROSITE Patterns/Profiles
1: SUSHI (A:10-75|A:76-135|A:138-195)
2: VWFA (A:245-444)
3: TRYPSIN_DOM (A:452-732)
4: TRYPSIN_HIS (A:497-502)
5: TRYPSIN_SER (A:668-679)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SUSHI
PS50923
Sushi/CCP/SCR domain profile.
CFAB_HUMAN
35-100
101-160
163-220
3
A:10-75
A:76-135
A:138-195
2
VWFA
PS50234
VWFA domain profile.
CFAB_HUMAN
270-469
1
A:245-444
3
TRYPSIN_DOM
PS50240
Serine proteases, trypsin domain profile.
CFAB_HUMAN
477-757
1
A:452-732
4
TRYPSIN_HIS
PS00134
Serine proteases, trypsin family, histidine active site.
CFAB_HUMAN
522-527
1
A:497-502
5
TRYPSIN_SER
PS00135
Serine proteases, trypsin family, serine active site.
CFAB_HUMAN
693-704
1
A:668-679
[
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]
Exons
(0, 0)
Info
All Exons
View:
Select:
Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2ok5a1 (A:200-452)
2a: SCOP_d2ok5a2 (A:138-199)
2b: SCOP_d2ok5a3 (A:77-137)
2c: SCOP_d2ok5a4 (A:9-76)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
vWA-like
(111)
Superfamily
:
vWA-like
(111)
Family
:
Integrin A (or I) domain
(84)
Protein domain
:
Complement factor B domain
(5)
Human (Homo sapiens) [TaxId: 9606]
(5)
1a
d2ok5a1
A:200-452
Class
:
Small proteins
(3458)
Fold
:
Complement control module/SCR domain
(70)
Superfamily
:
Complement control module/SCR domain
(70)
Family
:
Complement control module/SCR domain
(67)
Protein domain
:
Complement factor B
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d2ok5a2
A:138-199
2b
d2ok5a3
A:77-137
2c
d2ok5a4
A:9-76
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
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]
Pfam Domains
(3, 5)
Info
all PFAM domains
1a: PFAM_Trypsin_2ok5A01 (A:456-727)
2a: PFAM_Sushi_2ok5A02 (A:140-193)
2b: PFAM_Sushi_2ok5A03 (A:140-193)
2c: PFAM_Sushi_2ok5A04 (A:140-193)
3a: PFAM_VWA_2ok5A05 (A:245-443)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_PA
(797)
Family
:
Trypsin
(679)
Homo sapiens (Human)
(339)
1a
Trypsin-2ok5A01
A:456-727
Clan
:
no clan defined [family: Sushi]
(50)
Family
:
Sushi
(50)
Homo sapiens (Human)
(42)
2a
Sushi-2ok5A02
A:140-193
2b
Sushi-2ok5A03
A:140-193
2c
Sushi-2ok5A04
A:140-193
Clan
:
vWA-like
(60)
Family
:
VWA
(50)
Homo sapiens (Human)
(47)
3a
VWA-2ok5A05
A:245-443
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Asymmetric Unit 1
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Asym.Unit (132 KB)
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