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2OJX
Asym. Unit
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Asym.Unit (40 KB)
Biol.Unit 1 (36 KB)
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(1)
Title
:
MOLECULAR AND STRUCTURAL BASIS OF POLO-LIKE KINASE 1 SUBSTRATE RECOGNITION: IMPLICATIONS IN CENTROSOMAL LOCALIZATION
Authors
:
B. Garcia-Alvarez, G. De Carcer, S. Ibanez, E. Bragado-Nilsson, G. Montoya
Date
:
15 Jan 07 (Deposition) - 13 Feb 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,E
Biol. Unit 1: A,E (1x)
Keywords
:
Polo Box Domain, Kinase, Centrosome, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. Garcia-Alvarez, G. De Carcer, S. Ibanez, E. Bragado-Nilsson, G. Montoya
Molecular And Structural Basis Of Polo-Like Kinase 1 Substrate Recognition: Implications In Centrosomal Localization.
Proc. Natl. Acad. Sci. Usa V. 104 3107 2007
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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]
Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(2, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_041021 (L463H, chain A, )
2: VAR_041022 (R518H, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041021
L
463
H
PLK1_HUMAN
Polymorphism
45569335
A
L
463
H
2
UniProt
VAR_041022
R
518
H
PLK1_HUMAN
Polymorphism
56027600
A
R
518
H
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: POLO_BOX (A:417-480|A:515-584)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
POLO_BOX
PS50078
POLO box domain profile.
PLK1_HUMAN
417-480
515-584
2
A:417-480
A:515-584
[
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Exons
(6, 6)
Info
All Exons
Exon 1.6 (A:373-398)
Exon 1.7 (A:398-424)
Exon 1.8 (A:424-475)
Exon 1.9 (A:476-536 (gaps))
Exon 1.10a (A:537-594)
Exon 2.7 (E:1-7)
View:
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All Exon Boundaries
1: Boundary 1.5/1.6
2: Boundary 1.6/1.7
3: Boundary 1.7/1.8
4: Boundary 1.8/1.9
5: Boundary 1.9/1.10a
6: Boundary 1.10a/-
7: Boundary 2.6a/2.7
8: Boundary 2.7/2.8
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000300093
1a
ENSE00001107240
chr16:
23690143-23690661
519
PLK1_HUMAN
1-136
136
0
-
-
1.2b
ENST00000300093
2b
ENSE00001107217
chr16:
23691405-23691573
169
PLK1_HUMAN
137-193
57
0
-
-
1.3b
ENST00000300093
3b
ENSE00001107239
chr16:
23692235-23692379
145
PLK1_HUMAN
193-241
49
0
-
-
1.4
ENST00000300093
4
ENSE00001107237
chr16:
23693385-23693478
94
PLK1_HUMAN
241-272
32
0
-
-
1.5
ENST00000300093
5
ENSE00001107229
chr16:
23695191-23695410
220
PLK1_HUMAN
273-346
74
0
-
-
1.6
ENST00000300093
6
ENSE00001107234
chr16:
23698790-23698945
156
PLK1_HUMAN
346-398
53
1
A:373-398
26
1.7
ENST00000300093
7
ENSE00001107238
chr16:
23699989-23700066
78
PLK1_HUMAN
398-424
27
1
A:398-424
27
1.8
ENST00000300093
8
ENSE00001107241
chr16:
23700559-23700713
155
PLK1_HUMAN
424-475
52
1
A:424-475
52
1.9
ENST00000300093
9
ENSE00001107222
chr16:
23700815-23700997
183
PLK1_HUMAN
476-536
61
1
A:476-536 (gaps)
61
1.10a
ENST00000300093
10a
ENSE00001107226
chr16:
23701181-23701688
508
PLK1_HUMAN
537-603
67
1
A:537-594
58
2.2b
ENST00000323760
2b
ENSE00001853000
chr5:
137667524-137667284
241
MPIP3_HUMAN
-
0
0
-
-
2.3a
ENST00000323760
3a
ENSE00001245545
chr5:
137666907-137666676
232
MPIP3_HUMAN
1-65
65
0
-
-
2.4
ENST00000323760
4
ENSE00001086118
chr5:
137665336-137665242
95
MPIP3_HUMAN
65-97
33
0
-
-
2.5b
ENST00000323760
5b
ENSE00001774532
chr5:
137664218-137664173
46
MPIP3_HUMAN
97-112
16
0
-
-
2.6a
ENST00000323760
6a
ENSE00001086120
chr5:
137661743-137661710
34
MPIP3_HUMAN
112-123
12
0
-
-
2.7
ENST00000323760
7
ENSE00002184468
chr5:
137661593-137661504
90
MPIP3_HUMAN
124-153
30
1
E:1-7
7
2.8
ENST00000323760
8
ENSE00001245626
chr5:
137655063-137654908
156
MPIP3_HUMAN
154-205
52
0
-
-
2.9b
ENST00000323760
9b
ENSE00001086111
chr5:
137627805-137627659
147
MPIP3_HUMAN
206-254
49
0
-
-
2.10
ENST00000323760
10
ENSE00001086104
chr5:
137626429-137626328
102
MPIP3_HUMAN
255-288
34
0
-
-
2.11a
ENST00000323760
11a
ENSE00001086106
chr5:
137625252-137625190
63
MPIP3_HUMAN
289-309
21
0
-
-
2.12
ENST00000323760
12
ENSE00001086119
chr5:
137622956-137622858
99
MPIP3_HUMAN
310-342
33
0
-
-
2.13
ENST00000323760
13
ENSE00001086108
chr5:
137622319-137622186
134
MPIP3_HUMAN
343-387
45
0
-
-
2.14
ENST00000323760
14
ENSE00001195280
chr5:
137621822-137621711
112
MPIP3_HUMAN
387-424
38
0
-
-
2.15f
ENST00000323760
15f
ENSE00001853686
chr5:
137621530-137620954
577
MPIP3_HUMAN
425-473
49
0
-
-
[
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2ojxa1 (A:373-488)
1b: SCOP_d2ojxa2 (A:507-593)
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(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Polo-box domain
(18)
Superfamily
:
Polo-box domain
(18)
Family
:
Polo-box duplicated region
(17)
Protein domain
:
Serine/threonine-protein kinase plk C-terminal domain
(17)
Human (Homo sapiens) [TaxId: 9606]
(16)
1a
d2ojxa1
A:373-488
1b
d2ojxa2
A:507-593
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ojxA02 (A:412-508)
1b: CATH_2ojxA01 (A:373-411,A:509-594)
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(
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(
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)
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(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Arylsulfatase, C-terminal domain
(26)
Homologous Superfamily
:
Polo-box like domain
(10)
Human (Homo sapiens)
(10)
1a
2ojxA02
A:412-508
1b
2ojxA01
A:373-411,A:509-594
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_POLO_box_2ojxA01 (A:515-584)
1b: PFAM_POLO_box_2ojxA02 (A:515-584)
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Clans
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: POLO_box]
(13)
Family
:
POLO_box
(13)
Homo sapiens (Human)
(12)
1a
POLO_box-2ojxA01
A:515-584
1b
POLO_box-2ojxA02
A:515-584
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Asymmetric Unit 1
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