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2OJ5
Asym. Unit
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Asym.Unit (335 KB)
Biol.Unit 1 (167 KB)
Biol.Unit 2 (167 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF REOVIRUS T3D ATTACHMENT PROTEIN SIGMA1 HEAD DOMAIN WILD-TYPE AT 1.75 A RESOLUTION
Authors
:
T. Stehle, P. Schelling, E. Kirchner, T. S. Dermody
Date
:
12 Jan 07 (Deposition) - 13 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Beta-Barrel, Beta-Spiral Repeat, Aspartic Acid Cluster, Greek Key Motif, Trimer, Viral Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
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Reference
:
P. Schelling, K. M. Guglielmi, E. Kirchner, B. Paetzold, T. S. Dermody T. Stehle
The Reovirus Sigma1 Aspartic Acid Sandwich: A Trimerization Motif Poised For Conformational Change.
J. Biol. Chem. V. 282 11582 2007
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: MAGNESIUM ION (MGa)
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No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
MG
1
Ligand/Ion
MAGNESIUM ION
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Sites
(2, 2)
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1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH A:2146 , HOH A:2213 , HOH A:2214 , HOH A:2215 , HOH A:2216
BINDING SITE FOR RESIDUE MG A 2001
2
AC2
SOFTWARE
ASP B:365 , GLU B:419 , ARG B:427 , ARG B:429 , HOH B:2615 , GLY E:330 , ASN E:332
BINDING SITE FOR RESIDUE GOL B 2500
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 9)
Info
All SCOP Domains
1a: SCOP_d2oj5b1 (B:293-312)
1b: SCOP_d2oj5c1 (C:293-312)
1c: SCOP_d2oj5f1 (F:293-312)
2a: SCOP_d2oj5a1 (A:313-455)
2b: SCOP_d2oj5e1 (E:313-454)
2c: SCOP_d2oj5f2 (F:313-455)
2d: SCOP_d2oj5b2 (B:313-455)
2e: SCOP_d2oj5c2 (C:313-454)
2f: SCOP_d2oj5d1 (D:313-454)
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Class
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All beta proteins
(24004)
Fold
:
Triple beta-spiral
(6)
Superfamily
:
Fibre shaft of virus attachment proteins
(6)
Family
:
automated matches
(2)
Protein domain
:
automated matches
(2)
Reovirus sp. [TaxId: 10891]
(2)
1a
d2oj5b1
B:293-312
1b
d2oj5c1
C:293-312
1c
d2oj5f1
F:293-312
Fold
:
Virus attachment protein globular domain
(47)
Superfamily
:
Virus attachment protein globular domain
(47)
Family
:
Reovirus attachment protein sigma 1 head domain
(3)
Protein domain
:
automated matches
(2)
Reovirus sp. [TaxId: 10891]
(2)
2a
d2oj5a1
A:313-455
2b
d2oj5e1
E:313-454
2c
d2oj5f2
F:313-455
2d
d2oj5b2
B:313-455
2e
d2oj5c2
C:313-454
2f
d2oj5d1
D:313-454
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CATH Domains
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Reo_sigma1_2oj5F01 (F:293-454)
1b: PFAM_Reo_sigma1_2oj5F02 (F:293-454)
1c: PFAM_Reo_sigma1_2oj5F03 (F:293-454)
1d: PFAM_Reo_sigma1_2oj5F04 (F:293-454)
1e: PFAM_Reo_sigma1_2oj5F05 (F:293-454)
1f: PFAM_Reo_sigma1_2oj5F06 (F:293-454)
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Clan
:
Reo_sigma
(16)
Family
:
Reo_sigma1
(3)
Reovirus type 3 (strain Dearing) (T3D) (Mammalian orthoreovirus 3)
(3)
1a
Reo_sigma1-2oj5F01
F:293-454
1b
Reo_sigma1-2oj5F02
F:293-454
1c
Reo_sigma1-2oj5F03
F:293-454
1d
Reo_sigma1-2oj5F04
F:293-454
1e
Reo_sigma1-2oj5F05
F:293-454
1f
Reo_sigma1-2oj5F06
F:293-454
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Show PDB file:
Asym.Unit (335 KB)
Header - Asym.Unit
Biol.Unit 1 (167 KB)
Header - Biol.Unit 1
Biol.Unit 2 (167 KB)
Header - Biol.Unit 2
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