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2OJ2
Asym. Unit
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Asym.Unit (509 KB)
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Models
(20 )
Title
:
NMR STRUCTURE ANALYSIS OF THE HEMATOPOETIC CELL KINASE SH3 DOMAIN COMPLEXED WITH AN ARTIFICIAL HIGH AFFINITY LIGAND (PD1)
Authors
:
H. Schmidt, S. Hoffmann, T. Tran, M. Stoldt, T. Stangler, K. Wiesehan, D. Willbold
Date
:
12 Jan 07 (Deposition) - 30 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (20 x)
Keywords
:
Human Hck; Sh3; Src-Type Tyrosine Kinase; Nmr, Signaling Protein, Transferase/Inhibitor Complex, Signaling Protein, Transferase/Inhibitor Complex
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
H. Schmidt, S. Hoffmann, T. Tran, M. Stoldt, T. Stangler, K. Wiesehan, D. Willbold
Solution Structure Of A Hck Sh3 Domain Ligand Complex Reveals Novel Interaction Modes
J. Mol. Biol. V. 365 1517 2007
(for further references see the
PDB file header
)
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Hetero Components
(2, 2)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
2a: AMINO GROUP (NH2a)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
1
Mod. Amino Acid
ACETYL GROUP
2
NH2
1
Mod. Amino Acid
AMINO GROUP
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
SER A:56 , TRP A:59 , TRP A:60 , TYR A:72
BINDING SITE FOR RESIDUE ACE B 119
2
AC2
SOFTWARE
LEU B:131
BINDING SITE FOR RESIDUE NH2 B 132
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available in "Model" view)
All SNPs/Variants
1: VAR_041708 (M50L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_041708
M
105
L
HCK_HUMAN
Polymorphism
55722810
A
M
50
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (A:23-83)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
HCK_HUMAN
78-138
1
A:23-83
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Exons
(5, 5)
Info
All Exons
Exon 1.1c (A:1-2)
Exon 1.4a (A:3-6 (gaps))
Exon 1.5 (A:7-21)
Exon 1.6a (A:21-55)
Exon 1.7 (A:55-86)
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All Exon Boundaries
1: Boundary -/1.1c
2: Boundary 1.1c/1.4a
3: Boundary 1.4a/1.5
4: Boundary 1.5/1.6a
5: Boundary 1.6a/1.7
6: Boundary 1.7/1.8
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000375852
1c
ENSE00002183369
chr20:
30640064-30640289
226
HCK_HUMAN
1-21
21
1
A:1-2
2
1.4a
ENST00000375852
4a
ENSE00001592701
chr20:
30659465-30659585
121
HCK_HUMAN
21-61
41
1
A:3-6 (gaps)
30
1.5
ENST00000375852
5
ENSE00000661152
chr20:
30661122-30661164
43
HCK_HUMAN
62-76
15
1
A:7-21
15
1.6a
ENST00000375852
6a
ENSE00000661153
chr20:
30661519-30661621
103
HCK_HUMAN
76-110
35
1
A:21-55
35
1.7
ENST00000375852
7
ENSE00000661154
chr20:
30662426-30662524
99
HCK_HUMAN
110-143
34
1
A:55-86
32
1.8
ENST00000375852
8
ENSE00000661155
chr20:
30667577-30667680
104
HCK_HUMAN
143-178
36
0
-
-
1.9
ENST00000375852
9
ENSE00000661156
chr20:
30671697-30671846
150
HCK_HUMAN
178-228
51
0
-
-
1.10
ENST00000375852
10
ENSE00000661157
chr20:
30672194-30672346
153
HCK_HUMAN
228-279
52
0
-
-
1.11
ENST00000375852
11
ENSE00000661158
chr20:
30674431-30674610
180
HCK_HUMAN
279-339
61
0
-
-
1.12
ENST00000375852
12
ENSE00000661159
chr20:
30676371-30676447
77
HCK_HUMAN
339-364
26
0
-
-
1.13
ENST00000375852
13
ENSE00001612642
chr20:
30681666-30681819
154
HCK_HUMAN
365-416
52
0
-
-
1.14
ENST00000375852
14
ENSE00001636203
chr20:
30686807-30686938
132
HCK_HUMAN
416-460
45
0
-
-
1.15d
ENST00000375852
15d
ENSE00001468583
chr20:
30689120-30689659
540
HCK_HUMAN
460-526
67
0
-
-
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SCOP Domains
(0, 0)
Info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2oj2A01 (A:24-86)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
2oj2A01
A:24-86
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH3_1_2oj2A01 (A:29-75)
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Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-2oj2A01
A:29-75
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