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2OI6
Asym. Unit
Info
Asym.Unit (164 KB)
Biol.Unit 1 (231 KB)
Biol.Unit 2 (235 KB)
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(1)
Title
:
E. COLI GLMU- COMPLEX WITH UDP-GLCNAC, COA AND GLCN-1-PO4
Authors
:
L. R. Olsen, M. W. Vetting, S. L. Roderick
Date
:
10 Jan 07 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (3x)
Biol. Unit 2: B (3x)
Keywords
:
Left-Handed Beta Helix, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. R. Olsen, M. W. Vetting, S. L. Roderick
Structure Of The E. Coli Bifunctional Glmu Acetyltransferase Active Site With Substrates And Products.
Protein Sci. V. 16 1230 2007
(for further references see the
PDB file header
)
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Hetero Components
(6, 12)
Info
All Hetero Components
2a: COENZYME A (COAa)
2b: COENZYME A (COAb)
1a: COBALT (II) ION (COa)
2b: COBALT (II) ION (COb)
3a: GLUCOSAMINE 1-PHOSPHATE (GP1a)
3b: GLUCOSAMINE 1-PHOSPHATE (GP1b)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
4c: MAGNESIUM ION (MGc)
5a: SULFATE ION (SO4a)
6a: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1a)
6b: URIDINE-DIPHOSPHATE-N-ACETYLGLUCOS... (UD1b)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CO
2
Ligand/Ion
COBALT (II) ION
2
COA
2
Ligand/Ion
COENZYME A
3
GP1
2
Ligand/Ion
GLUCOSAMINE 1-PHOSPHATE
4
MG
3
Ligand/Ion
MAGNESIUM ION
5
SO4
1
Ligand/Ion
SULFATE ION
6
UD1
2
Ligand/Ion
URIDINE-DIPHOSPHATE-N-ACETYLGLUCOSAMINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ARG A:333 , LYS A:351 , LYS A:360 , HIS A:363 , TYR A:366 , ASN A:377 , ASN A:386 , LYS A:392 , COA A:2000 , HOH A:8001 , HOH A:8386 , HOH A:8431
BINDING SITE FOR RESIDUE GP1 A 5000
02
AC2
SOFTWARE
ARG B:333 , LYS B:351 , HIS B:363 , TYR B:366 , ASN B:377 , ASN B:386 , TYR B:387 , LYS B:392 , HOH B:8000 , HOH B:8387
BINDING SITE FOR RESIDUE GP1 B 5001
03
AC3
SOFTWARE
LYS B:25 , ASP B:105 , ASN B:227 , UD1 B:4001 , HOH B:8218 , HOH B:8374
BINDING SITE FOR RESIDUE MG B 6000
04
AC4
SOFTWARE
ASP B:406 , CO B:6002 , HOH B:8389
BINDING SITE FOR RESIDUE MG B 6001
05
AC5
SOFTWARE
ASP B:406 , MG B:6001 , HOH B:8543
BINDING SITE FOR RESIDUE CO B 6002
06
AC6
SOFTWARE
ASP A:406 , GLN A:408 , HOH A:8454
BINDING SITE FOR RESIDUE CO A 6003
07
AC7
SOFTWARE
ASP A:406 , HOH A:8388
BINDING SITE FOR RESIDUE MG A 6004
08
AC8
SOFTWARE
LYS B:15 , GLY B:16 , THR B:17 , ARG B:18 , UD1 B:4001 , HOH B:8222 , HOH B:8491
BINDING SITE FOR RESIDUE SO4 B 7000
09
AC9
SOFTWARE
CYS A:385 , ASN A:386 , TYR A:387 , PHE A:402 , GLY A:404 , SER A:405 , ALA A:422 , ALA A:423 , ARG A:440 , LYS A:446 , TRP A:449 , GP1 A:5000 , HOH A:8001 , HOH A:8012 , HOH A:8072 , HOH A:8132 , HOH A:8256 , HOH A:8384 , HOH A:8556 , HOH A:8608 , ARG B:429 , PRO B:442 , HOH B:8517
BINDING SITE FOR RESIDUE COA A 2000
10
BC1
SOFTWARE
ARG A:429 , PRO A:442 , HOH A:8586 , CYS B:385 , ASN B:386 , TYR B:387 , GLY B:404 , SER B:405 , ALA B:422 , ALA B:423 , ARG B:440 , LYS B:446 , TRP B:449 , HOH B:8000 , HOH B:8089 , HOH B:8096 , HOH B:8221 , HOH B:8272 , HOH B:8351 , HOH B:8443 , HOH B:8605 , HOH B:8625
BINDING SITE FOR RESIDUE COA B 2001
11
BC2
SOFTWARE
LEU A:11 , ALA A:13 , GLY A:14 , GLN A:76 , GLN A:79 , LEU A:80 , GLY A:81 , THR A:82 , TYR A:103 , ASP A:105 , TYR A:139 , GLY A:140 , GLU A:154 , ASN A:169 , TYR A:197 , ILE A:198 , THR A:199 , HOH A:8263 , HOH A:8274 , HOH A:8281 , HOH A:8292 , HOH A:8323 , HOH A:8346 , HOH A:8353 , HOH A:8546 , HOH A:8558 , HOH A:8609
BINDING SITE FOR RESIDUE UD1 A 4000
12
BC3
SOFTWARE
LEU B:11 , ALA B:12 , ALA B:13 , GLY B:14 , ARG B:18 , LYS B:25 , GLN B:76 , GLN B:79 , LEU B:80 , GLY B:81 , THR B:82 , ALA B:85 , TYR B:103 , GLY B:104 , ASP B:105 , TYR B:139 , GLY B:140 , GLU B:154 , ASN B:169 , THR B:170 , TYR B:197 , THR B:199 , ASN B:227 , MG B:6000 , SO4 B:7000 , HOH B:8215 , HOH B:8218 , HOH B:8220 , HOH B:8226 , HOH B:8261 , HOH B:8374
BINDING SITE FOR RESIDUE UD1 B 4001
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HEXAPEP_TRANSFERASES (A:403-431,B:403-431)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HEXAPEP_TRANSFERASES
PS00101
Hexapeptide-repeat containing-transferases signature.
GLMU_ECOLI
403-431
2
A:403-431
B:403-431
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d2oi6a1 (A:252-453)
1b: SCOP_d2oi6b1 (B:252-454)
2a: SCOP_d2oi6a2 (A:4-251)
2b: SCOP_d2oi6b2 (B:3-251)
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Families
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Single-stranded left-handed beta-helix
(154)
Superfamily
:
Trimeric LpxA-like enzymes
(147)
Family
:
GlmU C-terminal domain-like
(22)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, C-terminal domain
(12)
Escherichia coli [TaxId: 562]
(6)
1a
d2oi6a1
A:252-453
1b
d2oi6b1
B:252-454
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Nucleotide-diphospho-sugar transferases
(408)
Superfamily
:
Nucleotide-diphospho-sugar transferases
(408)
Family
:
UDP-glucose pyrophosphorylase
(25)
Protein domain
:
N-acetylglucosamine 1-phosphate uridyltransferase GlmU, N-terminal domain
(12)
Escherichia coli [TaxId: 562]
(6)
2a
d2oi6a2
A:4-251
2b
d2oi6b2
B:3-251
[
close SCOP info
]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2oi6B01 (B:3-227)
1b: CATH_2oi6A01 (A:4-227)
2a: CATH_2oi6A02 (A:228-453)
2b: CATH_2oi6B02 (B:228-454)
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(
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Homologous Superfamily
:
Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A
(231)
Escherichia coli. Organism_taxid: 562.
(8)
1a
2oi6B01
B:3-227
1b
2oi6A01
A:4-227
Class
:
Mainly Beta
(13760)
Architecture
:
3 Solenoid
(196)
Topology
:
UDP N-Acetylglucosamine Acyltransferase; domain 1
(90)
Homologous Superfamily
:
Hexapeptide repeat proteins
(85)
Escherichia coli. Organism_taxid: 562.
(10)
2a
2oi6A02
A:228-453
2b
2oi6B02
B:228-454
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_NTP_transf_3_2oi6B01 (B:8-252)
1b: PFAM_NTP_transf_3_2oi6B02 (B:8-252)
2a: PFAM_Hexapep_2oi6B03 (B:394-429)
2b: PFAM_Hexapep_2oi6B04 (B:394-429)
2c: PFAM_Hexapep_2oi6B05 (B:394-429)
2d: PFAM_Hexapep_2oi6B06 (B:394-429)
2e: PFAM_Hexapep_2oi6B07 (B:394-429)
2f: PFAM_Hexapep_2oi6B08 (B:394-429)
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Clans
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(
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(
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Organisms
(
)
(
)
Clan
:
GT-A
(172)
Family
:
NTP_transf_3
(13)
Escherichia coli (strain K12)
(3)
1a
NTP_transf_3-2oi6B01
B:8-252
1b
NTP_transf_3-2oi6B02
B:8-252
Clan
:
no clan defined [family: Hexapep]
(52)
Family
:
Hexapep
(52)
Escherichia coli (strain K12)
(13)
2a
Hexapep-2oi6B03
B:394-429
2b
Hexapep-2oi6B04
B:394-429
2c
Hexapep-2oi6B05
B:394-429
2d
Hexapep-2oi6B06
B:394-429
2e
Hexapep-2oi6B07
B:394-429
2f
Hexapep-2oi6B08
B:394-429
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