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Getting 'Exon' information from database.
2OHF
Asym. Unit
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Asym.Unit (61 KB)
Biol.Unit 1 (56 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HUMAN OLA1 IN COMPLEX WITH AMPPCP
Authors
:
T. Marquardt, D. Kostrewa
Date
:
10 Jan 07 (Deposition) - 24 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Atpase; Gtpase; P-Loop; Obg-Like, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Koller-Eichhorn, T. Marquardt, R. Gail, A. Wittinghofer, D. Kostrewa, U. Kutay, C. Kambach
Human Ola1 Defines An Atpase Subfamily In The Obg Family Of Gtp-Binding Proteins
J. Biol. Chem. V. 282 19928 2007
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: PHOSPHOMETHYLPHOSPHONIC ACID ADENY... (ACPa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACP
1
Ligand/Ion
PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PRO A:31 , ASN A:32 , VAL A:33 , GLY A:34 , LYS A:35 , SER A:36 , THR A:37 , ASN A:230 , LEU A:231 , SER A:232 , ALA A:266
BINDING SITE FOR RESIDUE ACP A 9001
[
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_036613 (E168Q, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_036613
E
168
Q
OLA1_HUMAN
Unclassified
---
A
E
168
Q
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: G_OBG (A:23-283)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
G_OBG
PS51710
OBG-type guanine nucleotide-binding (G) domain profile.
OLA1_HUMAN
23-283
1
A:23-283
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Exons
(10, 10)
Info
All Exons
Exon 1.4 (A:16-34)
Exon 1.5 (A:34-82 (gaps))
Exon 1.6b (A:82-125 (gaps))
Exon 1.8 (A:125-183 (gaps))
Exon 1.10a (A:184-210 (gaps))
Exon 1.11 (A:211-243)
Exon 1.13b (A:243-290)
Exon 1.14a (A:290-322)
Exon 1.15b (A:323-363)
Exon 1.16g (A:364-388)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1a/1.4
02: Boundary 1.4/1.5
03: Boundary 1.5/1.6b
04: Boundary 1.6b/1.8
05: Boundary 1.8/1.10a
06: Boundary 1.10a/1.11
07: Boundary 1.11/1.13b
08: Boundary 1.13b/1.14a
09: Boundary 1.14a/1.15b
10: Boundary 1.15b/1.16g
11: Boundary 1.16g/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000284719
1a
ENSE00001411681
chr2:
175113426-175113180
247
OLA1_HUMAN
-
0
0
-
-
1.4
ENST00000284719
4
ENSE00002148776
chr2:
175111543-175111443
101
OLA1_HUMAN
1-34
34
1
A:16-34
19
1.5
ENST00000284719
5
ENSE00001789065
chr2:
175094179-175094036
144
OLA1_HUMAN
34-82
49
1
A:34-82 (gaps)
49
1.6b
ENST00000284719
6b
ENSE00001623367
chr2:
175087888-175087761
128
OLA1_HUMAN
82-125
44
1
A:82-125 (gaps)
44
1.8
ENST00000284719
8
ENSE00001703803
chr2:
175006728-175006553
176
OLA1_HUMAN
125-183
59
1
A:125-183 (gaps)
59
1.10a
ENST00000284719
10a
ENSE00000964472
chr2:
174988403-174988323
81
OLA1_HUMAN
184-210
27
1
A:184-210 (gaps)
27
1.11
ENST00000284719
11
ENSE00000934278
chr2:
174988005-174987908
98
OLA1_HUMAN
211-243
33
1
A:211-243
33
1.13b
ENST00000284719
13b
ENSE00000934279
chr2:
174946792-174946652
141
OLA1_HUMAN
243-290
48
1
A:243-290
48
1.14a
ENST00000284719
14a
ENSE00000934280
chr2:
174945976-174945880
97
OLA1_HUMAN
290-322
33
1
A:290-322
33
1.15b
ENST00000284719
15b
ENSE00000934281
chr2:
174943818-174943696
123
OLA1_HUMAN
323-363
41
1
A:323-363
41
1.16g
ENST00000284719
16g
ENSE00001284553
chr2:
174940255-174937175
3081
OLA1_HUMAN
364-396
33
1
A:364-388
25
[
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]
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d2ohfa2 (A:305-388)
2a: SCOP_d2ohfa1 (A:16-304)
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Classes
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
beta-Grasp (ubiquitin-like)
(1032)
Superfamily
:
TGS-like
(13)
Family
:
automated matches
(3)
Protein domain
:
automated matches
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2ohfa2
A:305-388
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Superfamily
:
P-loop containing nucleoside triphosphate hydrolases
(2083)
Family
:
automated matches
(303)
Protein domain
:
automated matches
(303)
Human (Homo sapiens) [TaxId: 9606]
(86)
2a
d2ohfa1
A:16-304
[
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CATH Domains
(3, 3)
Info
all CATH domains
1a: CATH_2ohfA01 (A:16-67,A:86-126,A:224-304)
2a: CATH_2ohfA02 (A:68-85,A:305-388)
3a: CATH_2ohfA03 (A:139-223)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2ohfA01
A:16-67,A:86-126,A:224-304
Architecture
:
Roll
(3276)
Topology
:
Ubiquitin-like (UB roll)
(674)
Homologous Superfamily
:
[code=3.10.20.30, no name defined]
(153)
Human (Homo sapiens)
(1)
2a
2ohfA02
A:68-85,A:305-388
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
DNA polymerase; domain 1
(617)
Homologous Superfamily
:
TGS-like domain
(3)
Human (Homo sapiens)
(1)
3a
2ohfA03
A:139-223
[
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Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_MMR_HSR1_2ohfA01 (A:24-231)
2a: PFAM_YchF_GTPase_C_2ohfA02 (A:305-388)
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(
)
Organisms
(
)
(
)
Clan
:
P-loop_NTPase
(1112)
Family
:
MMR_HSR1
(17)
Homo sapiens (Human)
(1)
1a
MMR_HSR1-2ohfA01
A:24-231
Clan
:
Ubiquitin
(279)
Family
:
YchF-GTPase_C
(1)
Homo sapiens (Human)
(1)
2a
YchF-GTPase_C-2ohfA02
A:305-388
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Asymmetric Unit 1
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