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2OGI
Asym. Unit
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Asym.Unit (79 KB)
Biol.Unit 1 (71 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE METAL DEPENDENT PHOSPHOHYDROLASE (SAG1661) FROM STREPTOCOCCUS AGALACTIAE SEROGROUP V AT 1.85 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
05 Jan 07 (Deposition) - 16 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Conserved Hypothetical Protein Tigr00488 (Np_688652. 1) From Streptococcus Agalactiae 2603 At 1. 85 A Resolution
To Be Published
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Hetero Components
(5, 17)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
1c: CHLORIDE ION (CLc)
2a: FE (III) ION (FEa)
2b: FE (III) ION (FEb)
2c: FE (III) ION (FEc)
2d: FE (III) ION (FEd)
3a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
3b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
4a: 2-(N-MORPHOLINO)-ETHANESULFONIC AC... (MESa)
5a: SELENOMETHIONINE (MSEa)
5b: SELENOMETHIONINE (MSEb)
5c: SELENOMETHIONINE (MSEc)
5d: SELENOMETHIONINE (MSEd)
5e: SELENOMETHIONINE (MSEe)
5f: SELENOMETHIONINE (MSEf)
5g: SELENOMETHIONINE (MSEg)
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No.
Name
Count
Type
Full Name
1
CL
3
Ligand/Ion
CHLORIDE ION
2
FE
4
Ligand/Ion
FE (III) ION
3
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
4
MES
1
Ligand/Ion
2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5
MSE
7
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(9, 9)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
9: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:29 , HIS A:58 , ASP A:59 , ASP A:135 , FE A:302 , GDP A:400 , HOH A:406
BINDING SITE FOR RESIDUE FE A 301
2
AC2
SOFTWARE
ASP A:59 , HIS A:91 , HIS A:117 , FE A:301 , GDP A:400 , HOH A:406
BINDING SITE FOR RESIDUE FE A 302
3
AC3
SOFTWARE
HIS B:29 , HIS B:58 , ASP B:59 , ASP B:135 , FE B:302 , GDP B:400 , HOH B:413
BINDING SITE FOR RESIDUE FE B 301
4
AC4
SOFTWARE
ASP B:59 , HIS B:91 , HIS B:117 , FE B:301 , GDP B:400 , HOH B:413
BINDING SITE FOR RESIDUE FE B 302
5
AC5
SOFTWARE
GLY A:145 , VAL A:146 , GLU A:147
BINDING SITE FOR RESIDUE CL A 303
6
AC6
SOFTWARE
ARG A:35 , HIS A:139 , HOH A:445
BINDING SITE FOR RESIDUE CL A 305
7
AC7
SOFTWARE
HIS A:29 , ASP A:59 , LYS A:62 , ASN A:88 , HIS A:91 , HIS A:117 , THR A:118 , ASP A:135 , ARG A:141 , LEU A:172 , PRO A:178 , ILE A:179 , TYR A:180 , THR A:183 , FE A:301 , FE A:302 , HOH A:406 , HOH A:412 , HOH A:414 , HOH A:444 , HOH A:462 , HOH A:515
BINDING SITE FOR RESIDUE GDP A 400
8
AC8
SOFTWARE
HIS B:29 , ASP B:59 , LYS B:62 , ASN B:88 , HIS B:91 , HIS B:117 , THR B:118 , ASP B:135 , ARG B:141 , THR B:168 , LEU B:172 , PRO B:178 , TYR B:180 , THR B:183 , FE B:301 , FE B:302 , HOH B:413 , HOH B:421 , HOH B:422 , HOH B:442 , HOH B:465 , HOH B:467 , HOH B:494 , HOH B:506 , HOH B:523
BINDING SITE FOR RESIDUE GDP B 400
9
AC9
SOFTWARE
THR B:2 , TYR B:3 , ARG B:11 , ILE B:38 , LYS B:48 , GLU B:49
BINDING SITE FOR RESIDUE MES B 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(0, 0)
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All Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2ogiB00 (B:2-195)
1b: CATH_2ogiA00 (A:3-195)
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Organisms
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Hypothetical protein af1432
(13)
Homologous Superfamily
:
Hypothetical protein af1432
(13)
Streptococcus agalactiae serogroup v. Organism_taxid: 216466. Strain:2603 v/r.
(1)
1a
2ogiB00
B:2-195
1b
2ogiA00
A:3-195
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_HD_2ogiB01 (B:26-140)
1b: PFAM_HD_2ogiB02 (B:26-140)
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Clans
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Clan
:
HD_PDEase
(93)
Family
:
HD
(9)
Streptococcus agalactiae serotype V
(1)
1a
HD-2ogiB01
B:26-140
1b
HD-2ogiB02
B:26-140
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