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Getting 'Exon' information from database.
2OF5
Asym. Unit
Info
Asym.Unit (190 KB)
Biol.Unit 1 (184 KB)
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(1)
Title
:
OLIGOMERIC DEATH DOMAIN COMPLEX
Authors
:
H. H. Park, E. Logette, S. Raunser, S. Cuenin, T. Walz, J. Tschopp, H. Wu
Date
:
02 Jan 07 (Deposition) - 17 Apr 07 (Release) - 18 Sep 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.20
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L (1x)
Keywords
:
Death Domain Complex, Apoptosis
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. H. Park, E. Logette, S. Raunser, S. Cuenin, T. Walz, J. Tschopp, H. Wu
Death Domain Assembly Mechanism Revealed By Crystal Structure Of The Oligomeric Piddosome Core Complex.
Cell(Cambridge, Mass. ) V. 128 533 2007
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 7)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_067536 (G128R, chain A/B/C/D/E/F/G, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_067536
G
128
R
CRADD_HUMAN
Disease (MRT34)
---
A/B/C/D/E/F/G
G
128
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 12)
Info
All PROSITE Patterns/Profiles
1: DEATH_DOMAIN (A:116-188,B:116-188,C:116-188,D:11...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
DEATH_DOMAIN
PS50017
Death domain profile.
CRADD_HUMAN
116-188
7
A:116-188
B:116-188
C:116-188
D:116-188
E:116-188
F:116-188
G:116-188
PIDD1_HUMAN
788-873
5
H:788-873
I:788-873
J:788-873
K:788-873
L:788-873
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Exons
(3, 17)
Info
All Exons
Exon 1.3 (A:109-199 | B:109-199 | C:109-199 ...)
Exon 2.12d (H:777-825 | I:777-825 | J:777-825 ...)
Exon 2.12f (H:825-876 | I:825-876 | J:825-876 ...)
View:
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All Exon Boundaries
1: Boundary 1.2/1.3
2: Boundary 1.3/-
3: Boundary 2.12a/2.12d
4: Boundary 2.12d/2.12f
5: Boundary 2.12f/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000332896
1
ENSE00001274256
chr12:
94071151-94071248
98
CRADD_HUMAN
-
0
0
-
-
1.2
ENST00000332896
2
ENSE00001155225
chr12:
94072545-94072848
304
CRADD_HUMAN
1-100
100
0
-
-
1.3
ENST00000332896
3
ENSE00001274268
chr12:
94243746-94244527
782
CRADD_HUMAN
100-199
100
7
A:109-199
B:109-199
C:109-199
D:109-199
E:109-199
F:109-199
G:109-199
91
91
91
91
91
91
91
2.3a
ENST00000347755
3a
ENSE00001528767
chr11:
805245-805179
67
PIDD1_HUMAN
-
0
0
-
-
2.4d
ENST00000347755
4d
ENSE00002156903
chr11:
804463-804094
370
PIDD1_HUMAN
1-99
99
0
-
-
2.4i
ENST00000347755
4i
ENSE00001597904
chr11:
803587-803174
414
PIDD1_HUMAN
99-237
139
0
-
-
2.4k
ENST00000347755
4k
ENSE00001677661
chr11:
802891-802682
210
PIDD1_HUMAN
237-307
71
0
-
-
2.5
ENST00000347755
5
ENSE00001705700
chr11:
802597-802543
55
PIDD1_HUMAN
307-325
19
0
-
-
2.6a
ENST00000347755
6a
ENSE00001316798
chr11:
802396-802195
202
PIDD1_HUMAN
325-392
68
0
-
-
2.7a
ENST00000347755
7a
ENSE00001261956
chr11:
802090-801965
126
PIDD1_HUMAN
393-434
42
0
-
-
2.7d
ENST00000347755
7d
ENSE00001261948
chr11:
801624-801445
180
PIDD1_HUMAN
435-494
60
0
-
-
2.8b
ENST00000347755
8b
ENSE00001261939
chr11:
801365-801218
148
PIDD1_HUMAN
495-544
50
0
-
-
2.9c
ENST00000347755
9c
ENSE00001261871
chr11:
801120-800985
136
PIDD1_HUMAN
544-589
46
0
-
-
2.9e
ENST00000347755
9e
ENSE00001640578
chr11:
800912-800762
151
PIDD1_HUMAN
589-639
51
0
-
-
2.10
ENST00000347755
10
ENSE00001689202
chr11:
800666-800543
124
PIDD1_HUMAN
640-681
42
0
-
-
2.11b
ENST00000347755
11b
ENSE00001787229
chr11:
800451-800333
119
PIDD1_HUMAN
681-720
40
0
-
-
2.12a
ENST00000347755
12a
ENSE00001680356
chr11:
800244-800131
114
PIDD1_HUMAN
721-758
38
0
-
-
2.12d
ENST00000347755
12d
ENSE00001773574
chr11:
800014-799815
200
PIDD1_HUMAN
759-825
67
5
H:777-825
I:777-825
J:777-825
K:777-825
L:777-825
49
49
49
49
49
2.12f
ENST00000347755
12f
ENSE00001836053
chr11:
799565-799184
382
PIDD1_HUMAN
825-910
86
5
H:825-876
I:825-876
J:825-876
K:825-876
L:825-876
52
52
52
52
52
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SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
View:
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Sorry, no Info available
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Pfam Domains
(1, 7)
Info
all PFAM domains
1a: PFAM_Death_2of5G01 (G:117-194)
1b: PFAM_Death_2of5G02 (G:117-194)
1c: PFAM_Death_2of5G03 (G:117-194)
1d: PFAM_Death_2of5G04 (G:117-194)
1e: PFAM_Death_2of5G05 (G:117-194)
1f: PFAM_Death_2of5G06 (G:117-194)
1g: PFAM_Death_2of5G07 (G:117-194)
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Clans
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Clan
:
Death
(18)
Family
:
Death
(11)
Homo sapiens (Human)
(7)
1a
Death-2of5G01
G:117-194
1b
Death-2of5G02
G:117-194
1c
Death-2of5G03
G:117-194
1d
Death-2of5G04
G:117-194
1e
Death-2of5G05
G:117-194
1f
Death-2of5G06
G:117-194
1g
Death-2of5G07
G:117-194
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