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2ODE
Asym. Unit
Info
Asym.Unit (164 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (79 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE HETERODIMERIC COMPLEX OF HUMAN RGS8 AND ACTIVATED GI ALPHA 3
Authors
:
C. Gileadi, M. Soundararajan, A. P. Turnbull, J. M. Elkins, E. Papagrig A. C. W. Pike, G. Bunkoczi, F. Gorrec, C. Umeano, F. Von Delft, J. Weige A. Edwards, C. H. Arrowsmith, M. Sundstrom, D. A. Doyle, Structural G Consortium (Sgc)
Date
:
22 Dec 06 (Deposition) - 06 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
G Protein Signalling, Rgs, Heterotrimeric G Protein, Signalling Complex, Structural Genomics, Structural Genomics Consortium, Sgc, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Soundararajan, F. S. Willard, A. J. Kimple, A. P. Turnbull, L. J. Ball, G. A. Schoch, C. Gileadi, O. Y. Fedorov, E. F. Dowler, V. A. Higman, S. Q. Hutsell, M. Sundstrom, D. A. Doyle, D. P. Siderovski
Structural Diversity In The Rgs Domain And Its Interaction With Heterotrimeric G Protein Alpha-Subunits.
Proc. Natl. Acad. Sci. Usa V. 105 6457 2008
[
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: TETRAFLUOROALUMINATE ION (ALFa)
1b: TETRAFLUOROALUMINATE ION (ALFb)
2a: GUANOSINE-5'-DIPHOSPHATE (GDPa)
2b: GUANOSINE-5'-DIPHOSPHATE (GDPb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ALF
2
Ligand/Ion
TETRAFLUOROALUMINATE ION
2
GDP
2
Ligand/Ion
GUANOSINE-5'-DIPHOSPHATE
3
MG
2
Ligand/Ion
MAGNESIUM ION
[
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Sites
(6, 6)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLY A:42 , GLU A:43 , LYS A:46 , ARG A:178 , LYS A:180 , THR A:181 , GLY A:203 , GLN A:204 , GDP A:1001 , MG A:3001 , HOH A:3229 , HOH A:3231 , HOH A:3236
BINDING SITE FOR RESIDUE ALF A 2001
2
AC2
SOFTWARE
GLY C:42 , GLU C:43 , LYS C:46 , ARG C:178 , LYS C:180 , THR C:181 , VAL C:201 , GLY C:203 , GLN C:204 , GDP C:1002 , MG C:3002 , HOH C:3187 , HOH C:3190 , HOH C:3194
BINDING SITE FOR RESIDUE ALF C 2002
3
AC3
SOFTWARE
SER A:47 , THR A:181 , GDP A:1001 , ALF A:2001 , HOH A:3229 , HOH A:3231
BINDING SITE FOR RESIDUE MG A 3001
4
AC4
SOFTWARE
SER C:47 , THR C:181 , GDP C:1002 , ALF C:2002 , HOH C:3187 , HOH C:3190
BINDING SITE FOR RESIDUE MG C 3002
5
AC5
SOFTWARE
GLU A:43 , SER A:44 , GLY A:45 , LYS A:46 , SER A:47 , THR A:48 , SER A:151 , LEU A:175 , ARG A:176 , THR A:177 , ARG A:178 , ASN A:269 , LYS A:270 , ASP A:272 , LEU A:273 , CYS A:325 , ALA A:326 , THR A:327 , ALF A:2001 , MG A:3001 , HOH A:3002 , HOH A:3007 , HOH A:3012 , HOH A:3229 , HOH A:3231
BINDING SITE FOR RESIDUE GDP A 1001
6
AC6
SOFTWARE
GLU C:43 , SER C:44 , GLY C:45 , LYS C:46 , SER C:47 , THR C:48 , SER C:151 , LEU C:175 , ARG C:176 , THR C:177 , ARG C:178 , ASN C:269 , LYS C:270 , ASP C:272 , LEU C:273 , CYS C:325 , ALA C:326 , THR C:327 , ALF C:2002 , MG C:3002 , HOH C:3007 , HOH C:3008 , HOH C:3018 , HOH C:3187
BINDING SITE FOR RESIDUE GDP C 1002
[
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]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_068558 (G40R, chain A/C, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_068558
G
40
R
GNAI3_HUMAN
Disease (ARCND1)
---
A/C
G
40
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: RGS (B:56-172,D:56-171)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RGS
PS50132
RGS domain profile.
RGS8_HUMAN
56-172
2
B:56-172
D:56-171
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.7b (B:46-65 | D:56-65)
Exon 1.9 (B:65-120 | D:65-120)
Exon 1.10b (B:121-176 | D:121-171)
Exon 2.1 (A:33-40 | C:31-40)
Exon 2.2 (A:40-54 | C:40-54)
Exon 2.3 (A:54-101 | C:54-101)
Exon 2.4 (A:102-154 | C:102-154)
Exon 2.5 (A:154-197 | C:154-197)
Exon 2.6 (A:197-240 | C:197-240)
Exon 2.7 (A:241-292 | C:241-292)
Exon 2.8 (A:292-348 | C:292-347)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.6b/1.7b
02: Boundary 1.7b/1.9
03: Boundary 1.9/1.10b
04: Boundary 1.10b/-
05: Boundary -/2.1
06: Boundary 2.1/2.2
07: Boundary 2.2/2.3
08: Boundary 2.3/2.4
09: Boundary 2.4/2.5
10: Boundary 2.5/2.6
11: Boundary 2.6/2.7
12: Boundary 2.7/2.8
13: Boundary 2.8/2.9
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2c
ENST00000367557
2c
ENSE00002042322
chr1:
182642043-182641954
90
RGS8_HUMAN
-
0
0
-
-
1.4c
ENST00000367557
4c
ENSE00001606650
chr1:
182640865-182640792
74
RGS8_HUMAN
-
0
0
-
-
1.5
ENST00000367557
5
ENSE00002144493
chr1:
182638887-182638759
129
RGS8_HUMAN
1-9
9
0
-
-
1.6b
ENST00000367557
6b
ENSE00000822824
chr1:
182636108-182636007
102
RGS8_HUMAN
9-43
35
0
-
-
1.7b
ENST00000367557
7b
ENSE00000822823
chr1:
182635168-182635104
65
RGS8_HUMAN
43-65
23
2
B:46-65
D:56-65
20
10
1.9
ENST00000367557
9
ENSE00000822822
chr1:
182617438-182617272
167
RGS8_HUMAN
65-120
56
2
B:65-120
D:65-120
56
56
1.10b
ENST00000367557
10b
ENSE00001885057
chr1:
182616052-182615821
232
RGS8_HUMAN
121-180
60
2
B:121-176
D:121-171
56
51
2.1
ENST00000369851
1
ENSE00001451089
chr1:
110091233-110091460
228
GNAI3_HUMAN
1-40
40
2
A:33-40
C:31-40
8
10
2.2
ENST00000369851
2
ENSE00001781395
chr1:
110116359-110116401
43
GNAI3_HUMAN
40-54
15
2
A:40-54
C:40-54
15
15
2.3
ENST00000369851
3
ENSE00000783439
chr1:
110116518-110116659
142
GNAI3_HUMAN
54-101
48
2
A:54-101
C:54-101
48
48
2.4
ENST00000369851
4
ENSE00000826739
chr1:
110121826-110121983
158
GNAI3_HUMAN
102-154
53
2
A:102-154
C:102-154
53
53
2.5
ENST00000369851
5
ENSE00000826740
chr1:
110125059-110125187
129
GNAI3_HUMAN
154-197
44
2
A:154-197
C:154-197
44
44
2.6
ENST00000369851
6
ENSE00001740751
chr1:
110128838-110128967
130
GNAI3_HUMAN
197-240
44
2
A:197-240
C:197-240
44
44
2.7
ENST00000369851
7
ENSE00001756567
chr1:
110129351-110129504
154
GNAI3_HUMAN
241-292
52
2
A:241-292
C:241-292
52
52
2.8
ENST00000369851
8
ENSE00000913041
chr1:
110134665-110134877
213
GNAI3_HUMAN
292-354
63
2
A:292-348
C:292-347
57
56
2.9
ENST00000369851
9
ENSE00001342841
chr1:
110134967-110136975
2009
GNAI3_HUMAN
-
0
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2odeb_ (B:)
1b: SCOP_d2oded_ (D:)
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(
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Folds
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)
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)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Regulator of G-protein signaling, RGS
(52)
Superfamily
:
Regulator of G-protein signaling, RGS
(52)
Family
:
Regulator of G-protein signaling, RGS
(27)
Protein domain
:
automated matches
(6)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2odeb_
B:
1b
d2oded_
D:
[
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_2odeC01 (C:31-61,C:181-347)
1b: CATH_2odeA01 (A:33-61,A:181-348)
2a: CATH_2odeA02 (A:62-180)
2b: CATH_2odeC02 (C:62-180)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
P-loop containing nucleotide triphosphate hydrolases
(1378)
Human (Homo sapiens)
(413)
1a
2odeC01
C:31-61,C:181-347
1b
2odeA01
A:33-61,A:181-348
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
GI Alpha 1, domain 2-like
(67)
Homologous Superfamily
:
GI Alpha 1, domain 2-like
(66)
Human (Homo sapiens)
(13)
2a
2odeA02
A:62-180
2b
2odeC02
C:62-180
[
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]
Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_G_alpha_2odeC01 (C:31-347)
1b: PFAM_G_alpha_2odeC02 (C:31-347)
2a: PFAM_RGS_2odeD01 (D:56-171)
2b: PFAM_RGS_2odeD02 (D:56-171)
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)
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)
Clan
:
P-loop_NTPase
(1112)
Family
:
G-alpha
(24)
Homo sapiens (Human)
(6)
1a
G-alpha-2odeC01
C:31-347
1b
G-alpha-2odeC02
C:31-347
Clan
:
RGS
(17)
Family
:
RGS
(16)
Homo sapiens (Human)
(9)
2a
RGS-2odeD01
D:56-171
2b
RGS-2odeD02
D:56-171
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