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2ODD
Asym. Unit
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Asym.Unit (392 KB)
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Models
(25 )
Title
:
SOLUTION STRUCTURE OF THE MYND DOMAIN FROM AML1-ETO COMPLEXED WITH SMRT, A COREPRESSOR
Authors
:
Y. Z. Liu, W. Chen, J. Gaudet, M. D. Cheney, L. Roudaia, T. Cierpicki, R. C. Klet, K. Hartman, T. M. Laue, N. A. Speck, J. H. Bushweller
Date
:
22 Dec 06 (Deposition) - 19 Jun 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A,B (25 x)
Keywords
:
Mynd Zinc Finger, Cross-Braced Topology, Poly-Proline, Proline-Tryptophan Interaction, Metal Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Liu, W. Chen, J. Gaudet, M. D. Cheney, L. Roudaia, T. Cierpicki, R. C. Klet, K. Hartman, T. M. Laue, N. A. Speck, J. H. Bushweller
Structural Basis For Recognition Of Smrt/N-Cor By The Mynd Domain And Its Contribution To Aml1/Eto'S Activity.
Cancer Cell V. 11 483 2007
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: ZINC ION (ZNa)
1b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ZN
2
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
CYS A:663 , CYS A:666 , CYS A:683 , CYS A:687
BINDING SITE FOR RESIDUE ZN A 1
2
AC2
SOFTWARE
CYS A:674 , CYS A:677 , HIS A:695 , CYS A:699
BINDING SITE FOR RESIDUE ZN A 2
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available in "Model" view)
All SNPs/Variants
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PROSITE Patterns/Profiles
(2, 1)
Info
All PROSITE Patterns/Profiles
1: ZF_MYND_1 (A:663-699)
2: ZF_MYND_2 (A:663-699)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZF_MYND_1
PS01360
Zinc finger MYND-type signature.
MTG8_HUMAN
515-551
1
A:663-699
2
ZF_MYND_2
PS50865
Zinc finger MYND-type profile.
MTG8_HUMAN
515-551
1
A:663-699
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Exons
(2, 2)
Info
All Exons
Exon 1.22c (A:658-661)
Exon 1.23h (A:662-707)
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All Exon Boundaries
1: Boundary 1.21/1.22c
2: Boundary 1.22c/1.23h
3: Boundary 1.23h/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.6b
ENST00000265814
6b
ENSE00001297181
chr8:
93088364-93088193
172
MTG8_HUMAN
1-30
30
0
-
-
1.11l
ENST00000265814
11l
ENSE00001782570
chr8:
93029591-93029454
138
MTG8_HUMAN
30-76
47
0
-
-
1.12n
ENST00000265814
12n
ENSE00002197259
chr8:
93027048-93026807
242
MTG8_HUMAN
76-156
81
0
-
-
1.13c
ENST00000265814
13c
ENSE00001682869
chr8:
93023319-93023230
90
MTG8_HUMAN
157-186
30
0
-
-
1.14e
ENST00000265814
14e
ENSE00001706185
chr8:
93017525-93017344
182
MTG8_HUMAN
187-247
61
0
-
-
1.17b
ENST00000265814
17b
ENSE00001739575
chr8:
93004117-93003867
251
MTG8_HUMAN
247-331
85
0
-
-
1.18b
ENST00000265814
18b
ENSE00001770404
chr8:
92999200-92999115
86
MTG8_HUMAN
331-359
29
0
-
-
1.19
ENST00000265814
19
ENSE00001764658
chr8:
92998553-92998352
202
MTG8_HUMAN
360-427
68
0
-
-
1.21
ENST00000265814
21
ENSE00001658814
chr8:
92988201-92988133
69
MTG8_HUMAN
427-450
24
0
-
-
1.22c
ENST00000265814
22c
ENSE00001768415
chr8:
92983076-92982886
191
MTG8_HUMAN
450-513
64
1
A:658-661
4
1.23h
ENST00000265814
23h
ENSE00001226380
chr8:
92972745-92971152
1594
MTG8_HUMAN
514-604
91
1
A:662-707
46
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2odda_ (A:)
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Protein Domains
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Organisms
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(
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Class
:
Small proteins
(3458)
Fold
:
HIT/MYND zinc finger-like
(7)
Superfamily
:
HIT/MYND zinc finger-like
(7)
Family
:
MYND zinc finger
(6)
Protein domain
:
automated matches
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d2odda_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_zf_MYND_2oddA01 (A:663-699)
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Clan
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TRASH
(61)
Family
:
zf-MYND
(11)
Homo sapiens (Human)
(9)
1a
zf-MYND-2oddA01
A:663-699
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