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2ODC
Asym. Unit
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Asym.Unit (18 KB)
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(1)
Title
:
LEM-DOMAIN OF THE NUCLEAR ENVELOPE PROTEIN EMERIN
Authors
:
G. M. Clore, M. Cai
Date
:
22 Dec 06 (Deposition) - 13 Mar 07 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : I
Keywords
:
Inner Nuclear Membrane Protein, Lem-Domain Multidimensional Nmr Dipolar Couplings
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Cai, Y. Huang, J. Y. Suh, J. M. Louis, R. Ghirlando, R. Craigie, G. M. Clore
Solution Nmr Structure Of The Barrier-To-Autointegration Factor-Emerin Complex.
J. Biol. Chem. V. 282 14525 2007
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LEM (I:2-45)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LEM
PS50954
LEM domain profile.
EMD_HUMAN
1-45
1
I:2-45
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Exons
(2, 2)
Info
All Exons
Exon 1.1a (I:1-28)
Exon 1.2b (I:28-47)
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1: Boundary -/1.1a
2: Boundary 1.1a/1.2b
3: Boundary 1.2b/1.3a
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000369842
1a
ENSE00001925261
X:153607557-153607926
370
EMD_HUMAN
1-28
28
1
I:1-28
28
1.2b
ENST00000369842
2b
ENSE00001669344
X:153608050-153608154
105
EMD_HUMAN
28-63
36
1
I:28-47
20
1.3a
ENST00000369842
3a
ENSE00001626504
X:153608302-153608379
78
EMD_HUMAN
63-89
27
0
-
-
1.3d
ENST00000369842
3d
ENSE00001687247
X:153608594-153608727
134
EMD_HUMAN
89-133
45
0
-
-
1.4b
ENST00000369842
4b
ENSE00001605338
X:153609113-153609162
50
EMD_HUMAN
134-150
17
0
-
-
1.4j
ENST00000369842
4j
ENSE00000868367
X:153609242-153609883
642
EMD_HUMAN
150-254
105
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2odci_ (I:)
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(
)
Class
:
All alpha proteins
(14657)
Fold
:
LEM/SAP HeH motif
(33)
Superfamily
:
LEM domain
(6)
Family
:
LEM domain
(6)
Protein domain
:
Inner nuclear membrane protein emerin
(3)
Human (Homo sapiens) [TaxId: 9606]
(3)
1a
d2odci_
I:
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CATH Domains
(1, 1)
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all CATH domains
1a: CATH_2odcI00 (I:1-47)
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1
(23)
Homologous Superfamily
:
[code=1.10.720.40, no name defined]
(6)
Human (Homo sapiens)
(3)
1a
2odcI00
I:1-47
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Pfam Domains
(1, 1)
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all PFAM domains
1a: PFAM_LEM_2odcI01 (I:2-44)
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Clan
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HeH
(20)
Family
:
LEM
(2)
Homo sapiens (Human)
(2)
1a
LEM-2odcI01
I:2-44
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Chain I
Asymmetric Unit 1
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