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Asym. Unit
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Asym.Unit (45 KB)
Biol.Unit 1 (40 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF GENE PRODUCT VP1028 FROM VIBRIO PARAHAEMOLYTICUS
Authors
:
R. Zhang, M. Zhou, S. Moy, A. Joachimiak, Midwest Center For Structu Genomics (Mcsg)
Date
:
21 Dec 06 (Deposition) - 23 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.95
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Structural Genomics, Vibrio Parahaemolyticus, Unknown Function, Psi- 2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Zhang, M. Zhou, S. Moy, A. Joachimiak
The Crystal Structure Of Gene Product Vp1028 From Vibrio Parahaemolyticus
To Be Published
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Hetero Components
(3, 17)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MG
2
Ligand/Ion
MAGNESIUM ION
2
MSE
6
Mod. Amino Acid
SELENOMETHIONINE
3
SO4
9
Ligand/Ion
SULFATE ION
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Sites
(11, 11)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:7 , HOH A:414 , PRO B:4 , LYS B:7
BINDING SITE FOR RESIDUE MG B 301
02
AC2
SOFTWARE
ARG A:48 , GLN A:51
BINDING SITE FOR RESIDUE MG A 302
03
AC3
SOFTWARE
ASN B:42 , GLN B:44 , HIS B:46 , TYR B:65 , HOH B:409 , HOH B:420 , HOH B:488
BINDING SITE FOR RESIDUE SO4 B 401
04
AC4
SOFTWARE
ARG B:48 , ASP B:50 , GLN B:51
BINDING SITE FOR RESIDUE SO4 B 402
05
AC5
SOFTWARE
LYS B:69 , ARG B:70
BINDING SITE FOR RESIDUE SO4 B 403
06
AC6
SOFTWARE
LYS A:68 , LYS A:69 , ARG A:70 , HOH A:499
BINDING SITE FOR RESIDUE SO4 A 404
07
AC7
SOFTWARE
HIS A:46 , TYR A:65 , HOH A:411 , HOH A:425 , HOH A:473 , HOH A:513
BINDING SITE FOR RESIDUE SO4 A 405
08
AC8
SOFTWARE
GLY A:17 , THR A:18 , THR B:59 , HOH B:449 , HOH B:492
BINDING SITE FOR RESIDUE SO4 B 406
09
AC9
SOFTWARE
LYS B:68 , GLY B:71 , LYS B:98 , HOH B:441
BINDING SITE FOR RESIDUE SO4 B 407
10
BC1
SOFTWARE
ARG B:48 , LYS B:77 , TYR B:78 , HOH B:416 , HOH B:422
BINDING SITE FOR RESIDUE SO4 B 408
11
BC2
SOFTWARE
LYS A:7 , LYS A:11 , HOH A:410 , HOH A:445 , VAL B:41 , ASN B:42 , ASN B:43
BINDING SITE FOR RESIDUE SO4 A 409
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2od0a1 (A:3-105)
1b: SCOP_d2od0b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Secretion chaperone-like
(60)
Superfamily
:
YgaC/TfoX-N like
(2)
Family
:
TfoX N-terminal domain-like
(1)
Protein domain
:
Hypothetical protein VP1028
(1)
Vibrio parahaemolyticus [TaxId: 670]
(1)
1a
d2od0a1
A:3-105
1b
d2od0b_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2od0A00 (A:3-105)
1b: CATH_2od0B00 (B:3-104)
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Classes
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Topologies
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Yope Regulator; Chain: A,
(26)
Homologous Superfamily
:
YgaC/TfoX-N like chaperone
(1)
Vibrio parahaemolyticus rimd 2210633. Organism_taxid: 223926. Strain:rimd 2210633.
(1)
1a
2od0A00
A:3-105
1b
2od0B00
B:3-104
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_TfoX_N_2od0B01 (B:9-104)
1b: PFAM_TfoX_N_2od0B02 (B:9-104)
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Clan
:
no clan defined [family: TfoX_N]
(1)
Family
:
TfoX_N
(1)
Vibrio parahaemolyticus
(1)
1a
TfoX_N-2od0B01
B:9-104
1b
TfoX_N-2od0B02
B:9-104
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Asymmetric Unit 1
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