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2OCI
Asym. Unit
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Asym.Unit (52 KB)
Biol.Unit 1 (48 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF VALACYCLOVIR HYDROLASE COMPLEXED WITH A PRODUCT ANALOGUE
Authors
:
L. Lai, Z. Xu, G. L. Amidon
Date
:
20 Dec 06 (Deposition) - 05 Feb 08 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Alpha Beta Hydrolase Fold
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Lai, Z. Xu, J. Zhou, K. D. Lee, G. L. Amidon
Molecular Basis Of Prodrug Activation By Human Valacyclovirase, An Alpha-Amino Acid Ester Hydrolase.
J. Biol. Chem. V. 283 9318 2008
(for further references see the
PDB file header
)
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Hetero Components
(3, 3)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
2a: MANGANESE (II) ION (MNa)
3a: L-TYROSINAMIDE (TYCa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
1
Ligand/Ion
MAGNESIUM ION
2
MN
1
Ligand/Ion
MANGANESE (II) ION
3
TYC
1
Ligand/Ion
L-TYROSINAMIDE
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Sites
(3, 3)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:35 , GLU A:57 , ASP A:78 , HIS A:84 , HOH A:506
BINDING SITE FOR RESIDUE MN A 301
2
AC2
SOFTWARE
ASP A:204 , HOH A:552 , HOH A:621
BINDING SITE FOR RESIDUE MG A 302
3
AC3
SOFTWARE
GLY A:51 , MET A:52 , SER A:122 , ASP A:123 , ASP A:155 , ILE A:158 , TYR A:159 , ILE A:162 , TRP A:192 , HOH A:417 , HOH A:457 , HOH A:517 , HOH A:519
BINDING SITE FOR RESIDUE TYC A 401
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: LIPASE_SER (A:116-125)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LIPASE_SER
PS00120
Lipases, serine active site.
BPHL_HUMAN
133-142
1
A:116-125
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Exons
(6, 6)
Info
All Exons
Exon 1.3a (A:21-54)
Exon 1.4b (A:54-109)
Exon 1.5 (A:110-161)
Exon 1.6b (A:161-205)
Exon 1.7c (A:205-246)
Exon 1.9i (A:246-274)
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All Exon Boundaries
1: Boundary 1.1c/1.3a
2: Boundary 1.3a/1.4b
3: Boundary 1.4b/1.5
4: Boundary 1.5/1.6b
5: Boundary 1.6b/1.7c
6: Boundary 1.7c/1.9i
7: Boundary 1.9i/-
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1c
ENST00000380379
1c
ENSE00001484766
chr6:
3118926-3119081
156
BPHL_HUMAN
1-36
36
0
-
-
1.3a
ENST00000380379
3a
ENSE00001975620
chr6:
3123891-3123994
104
BPHL_HUMAN
36-71
36
1
A:21-54
34
1.4b
ENST00000380379
4b
ENSE00001985048
chr6:
3127476-3127642
167
BPHL_HUMAN
71-126
56
1
A:54-109
56
1.5
ENST00000380379
5
ENSE00001971814
chr6:
3129279-3129432
154
BPHL_HUMAN
127-178
52
1
A:110-161
52
1.6b
ENST00000380379
6b
ENSE00001989101
chr6:
3137596-3137727
132
BPHL_HUMAN
178-222
45
1
A:161-205
45
1.7c
ENST00000380379
7c
ENSE00001968789
chr6:
3140620-3140743
124
BPHL_HUMAN
222-263
42
1
A:205-246
42
1.9i
ENST00000380379
9i
ENSE00001923833
chr6:
3152722-3153812
1091
BPHL_HUMAN
263-291
29
1
A:246-274
29
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2ocia_ (A:)
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Classes
(
)
(
)
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(
)
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)
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)
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)
Families
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
alpha/beta-Hydrolases
(971)
Superfamily
:
alpha/beta-Hydrolases
(971)
Family
:
automated matches
(184)
Protein domain
:
automated matches
(184)
Human (Homo sapiens) [TaxId: 9606]
(42)
1a
d2ocia_
A:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Abhydrolase_6_2ociA01 (A:46-268)
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Clans
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)
(
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Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
AB_hydrolase
(347)
Family
:
Abhydrolase_6
(67)
Homo sapiens (Human)
(4)
1a
Abhydrolase_6-2ociA01
A:46-268
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Chain A
Asymmetric Unit 1
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