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2OC3
Asym. Unit
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Asym.Unit (56 KB)
Biol.Unit 1 (52 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF HUMAN PROTEIN TYROSINE PHOSPHATASE NON-RECEPTOR TYPE 18
Authors
:
E. Ugochukwu, A. Barr, I. Alfano, F. Gorrec, C. Umeano, P. Savitsky, F. Sobott, J. Eswaran, E. Papagrigoriou, J. E. Debreczeni, A. Turnbull, G. Bunkoczi, M. Sundstrom, C. H. Arrowsmith, J. Weigelt, A. Edwards, F. Von Delft, S. Knapp, Structural Genomics Consortium (Sgc)
Date
:
20 Dec 06 (Deposition) - 30 Jan 07 (Release) - 09 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.50
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Protein Tyrosine Phosphatase, Receptor, Human, Structural Genomics, Structural Genomics Consortium, Sgc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
A. J. Barr, E. Ugochukwu, W. H. Lee, O. N. King, P. Filippakopoulos, I. Alfano, P. Savitsky, N. A. Burgess-Brown, S. Muller, S. Knapp
Large-Scale Structural Analysis Of The Classical Human Protein Tyrosine Phosphatome.
Cell(Cambridge, Mass. ) V. 136 352 2009
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_047651 (M193V, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_047651
M
193
V
PTN18_HUMAN
Polymorphism
3739124
A
M
193
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(3, 3)
Info
All PROSITE Patterns/Profiles
1: TYR_PHOSPHATASE_PTP (A:26-291)
2: TYR_PHOSPHATASE_2 (A:205-282)
3: TYR_PHOSPHATASE_1 (A:227-237)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TYR_PHOSPHATASE_PTP
PS50055
PTP type protein phosphatase family profile.
PTN18_HUMAN
26-291
1
A:26-291
2
TYR_PHOSPHATASE_2
PS50056
Tyrosine specific protein phosphatases family profile.
PTN18_HUMAN
205-282
1
A:205-282
3
TYR_PHOSPHATASE_1
PS00383
Tyrosine specific protein phosphatases active site.
PTN18_HUMAN
227-237
1
A:227-237
[
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Exons
(11, 11)
Info
All Exons
Exon 1.1a (A:6-31 (gaps))
Exon 1.3b (A:32-68)
Exon 1.4b (A:68-93)
Exon 1.5a (A:94-125)
Exon 1.5c (A:126-138)
Exon 1.7b (A:139-161)
Exon 1.8 (A:162-182)
Exon 1.9b (A:183-230)
Exon 1.9i (A:230-252)
Exon 1.9l (A:253-278)
Exon 1.9n (A:279-293)
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.3b
03: Boundary 1.3b/1.4b
04: Boundary 1.4b/1.5a
05: Boundary 1.5a/1.5c
06: Boundary 1.5c/1.7b
07: Boundary 1.7b/1.8
08: Boundary 1.8/1.9b
09: Boundary 1.9b/1.9i
10: Boundary 1.9i/1.9l
11: Boundary 1.9l/1.9n
12: Boundary 1.9n/1.10a
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000175756
1a
ENSE00001776329
chr2:
131113580-131113773
194
PTN18_HUMAN
1-31
31
1
A:6-31 (gaps)
26
1.3b
ENST00000175756
3b
ENSE00001793686
chr2:
131116440-131116548
109
PTN18_HUMAN
32-68
37
1
A:32-68
37
1.4b
ENST00000175756
4b
ENSE00001668508
chr2:
131116806-131116882
77
PTN18_HUMAN
68-93
26
1
A:68-93
26
1.5a
ENST00000175756
5a
ENSE00001650051
chr2:
131116970-131117065
96
PTN18_HUMAN
94-125
32
1
A:94-125
32
1.5c
ENST00000175756
5c
ENSE00001657754
chr2:
131117181-131117219
39
PTN18_HUMAN
126-138
13
1
A:126-138
13
1.7b
ENST00000175756
7b
ENSE00001790718
chr2:
131126706-131126774
69
PTN18_HUMAN
139-161
23
1
A:139-161
23
1.8
ENST00000175756
8
ENSE00001673375
chr2:
131127338-131127400
63
PTN18_HUMAN
162-182
21
1
A:162-182
21
1.9b
ENST00000175756
9b
ENSE00000776192
chr2:
131127621-131127763
143
PTN18_HUMAN
183-230
48
1
A:183-230
48
1.9i
ENST00000175756
9i
ENSE00000776193
chr2:
131128130-131128196
67
PTN18_HUMAN
230-252
23
1
A:230-252
23
1.9l
ENST00000175756
9l
ENSE00000776194
chr2:
131128278-131128355
78
PTN18_HUMAN
253-278
26
1
A:253-278
26
1.9n
ENST00000175756
9n
ENSE00000776195
chr2:
131128448-131128537
90
PTN18_HUMAN
279-308
30
1
A:279-293
15
1.10a
ENST00000175756
10a
ENSE00000776196
chr2:
131128772-131128860
89
PTN18_HUMAN
309-338
30
0
-
-
1.11d
ENST00000175756
11d
ENSE00000776197
chr2:
131129830-131130056
227
PTN18_HUMAN
338-414
77
0
-
-
1.12b
ENST00000175756
12b
ENSE00000857404
chr2:
131130446-131130520
75
PTN18_HUMAN
414-439
26
0
-
-
1.13e
ENST00000175756
13e
ENSE00001159610
chr2:
131130730-131132982
2253
PTN18_HUMAN
439-460
22
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2oc3a_ (A:)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
(Phosphotyrosine protein) phosphatases II
(296)
Superfamily
:
(Phosphotyrosine protein) phosphatases II
(296)
Family
:
automated matches
(83)
Protein domain
:
automated matches
(83)
Human (Homo sapiens) [TaxId: 9606]
(76)
1a
d2oc3a_
A:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Y_phosphatase_2oc3A01 (A:56-290)
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(
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Clan
:
Phosphatase
(121)
Family
:
Y_phosphatase
(93)
Homo sapiens (Human)
(82)
1a
Y_phosphatase-2oc3A01
A:56-290
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Asymmetric Unit 1
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