PLEASE WAIT...
Getting 'Biological Unit' information from database.
PLEASE WAIT...
Getting 'Hetero Component' information from database.
PLEASE WAIT...
Getting 'Site' information from database.
PLEASE WAIT...
Getting 'PROSITE' information from database.
PLEASE WAIT...
Getting 'Exon' information from database.
2OC2
Asym. Unit
Info
Asym.Unit (104 KB)
Biol.Unit 1 (98 KB)
(using Jmol or JSmol)
spin
show selected part
auto zoom/center
Standard Views
(
Basic
|
Advanced
Interface
)
(
Basic
|
Advanced
Interface
)
Help
(1)
Title
:
STRUCTURE OF TESTIS ACE WITH RXPA380
Authors
:
H. R. Corradi, C. S. Anthony, S. L. Schwager, P. Redelinghuys, D. Georgi V. Dive, K. R. Acharya, E. D. Sturrock
Date
:
20 Dec 06 (Deposition) - 22 May 07 (Release) - 11 Apr 12 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.25
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Enzyme-Inhibitor Complex, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. S. Anthony, H. R. Corradi, S. L. Schwager, P. Redelinghuys, D. Georgiadis, V. Dive, K. R. Acharya, E. D. Sturrock
The N Domain Of Human Angiotensin-I Converting Enzyme: The Role Of N-Glycosylation And The Crystal Structure In Comple With An N Domain Specific Phosphinic Inhibitor Rxp407.
J. Biol. Chem. V. 46 5473 2010
[
close entry info
]
Hetero Components
(3, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: N-({(1S,2R)-2-[(S)-[(1R)-1-{[(BENZ... (RX3a)
3a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
RX3
1
Ligand/Ion
N-({(1S,2R)-2-[(S)-[(1R)-1-{[(BENZYLOXY)CARBONYL]AMINO}-2-PHENYLETHYL](HYDROXY)PHOSPHORYL]CYCLOPENTYL}CARBONYL)-L-TRYPTOPHAN
3
ZN
1
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:383 , HIS A:387 , GLU A:411 , RX3 A:680
BINDING SITE FOR RESIDUE ZN A 701
2
AC2
SOFTWARE
ARG A:186 , TRP A:485 , TRP A:486 , ARG A:489
BINDING SITE FOR RESIDUE CL A 703
3
AC3
SOFTWARE
TYR A:224 , PRO A:519 , ARG A:522 , HOH A:763
BINDING SITE FOR RESIDUE CL A 704
4
AC4
SOFTWARE
GLN A:281 , HIS A:353 , ALA A:354 , SER A:355 , ALA A:356 , HIS A:383 , GLU A:384 , HIS A:387 , PHE A:391 , HIS A:410 , GLU A:411 , ASP A:415 , PHE A:457 , LYS A:511 , PHE A:512 , HIS A:513 , VAL A:518 , TYR A:520 , TYR A:523 , ZN A:701 , HOH A:786
BINDING SITE FOR RESIDUE RX3 A 680
[
close Site info
]
SAPs(SNPs)/Variants
(6, 6)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_034602 (M223T, chain A, )
2: VAR_023432 (T311M, chain A, )
3: VAR_014189 (I413T, chain A, )
4: VAR_014190 (F446V, chain A, )
5: VAR_023433 (T582M, chain A, )
6: VAR_023434 (P623L, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_034602
M
828
T
ACE_HUMAN
Polymorphism
13306091
A
M
223
T
2
UniProt
VAR_023432
T
916
M
ACE_HUMAN
Polymorphism
3730043
A
T
311
M
3
UniProt
VAR_014189
I
1018
T
ACE_HUMAN
Polymorphism
4976
A
I
413
T
4
UniProt
VAR_014190
F
1051
V
ACE_HUMAN
Polymorphism
4977
A
F
446
V
5
UniProt
VAR_023433
T
1187
M
ACE_HUMAN
Polymorphism
12709442
A
T
582
M
6
UniProt
VAR_023434
P
1228
L
ACE_HUMAN
Unclassified
---
A
P
623
L
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: ZINC_PROTEASE (-|A:380-389)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ZINC_PROTEASE
PS00142
Neutral zinc metallopeptidases, zinc-binding region signature.
ACE_HUMAN
387-396
985-994
1
-
A:380-389
[
close PROSITE info
]
Exons
(12, 12)
Info
All Exons
Exon 1.14 (A:40-81)
Exon 1.15 (A:82-134)
Exon 1.16 (A:135-164)
Exon 1.17 (A:164-212)
Exon 1.18 (A:212-276)
Exon 1.19 (A:276-308)
Exon 1.20 (A:309-366)
Exon 1.21 (A:366-441 (gaps))
Exon 1.22 (A:441-489)
Exon 1.23 (A:489-522)
Exon 1.24b (A:522-563)
Exon 1.25 (A:563-623)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.12/1.14
02: Boundary 1.14/1.15
03: Boundary 1.15/1.16
04: Boundary 1.16/1.17
05: Boundary 1.17/1.18
06: Boundary 1.18/1.19
07: Boundary 1.19/1.20
08: Boundary 1.20/1.21
09: Boundary 1.21/1.22
10: Boundary 1.22/1.23
11: Boundary 1.23/1.24b
12: Boundary 1.24b/1.25
13: Boundary 1.25/1.26b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000290866
1a
ENSE00001837678
chr17:
61554432-61554704
273
ACE_HUMAN
1-83
83
0
-
-
1.2
ENST00000290866
2
ENSE00001730325
chr17:
61555292-61555459
168
ACE_HUMAN
84-139
56
0
-
-
1.3
ENST00000290866
3
ENSE00001701763
chr17:
61556368-61556461
94
ACE_HUMAN
140-171
32
0
-
-
1.4
ENST00000290866
4
ENSE00001645813
chr17:
61557130-61557273
144
ACE_HUMAN
171-219
49
0
-
-
1.5
ENST00000290866
5
ENSE00001792699
chr17:
61557698-61557889
192
ACE_HUMAN
219-283
65
0
-
-
1.6
ENST00000290866
6
ENSE00001692982
chr17:
61558452-61558549
98
ACE_HUMAN
283-315
33
0
-
-
1.7
ENST00000290866
7
ENSE00001711922
chr17:
61558927-61559099
173
ACE_HUMAN
316-373
58
0
-
-
1.8
ENST00000290866
8
ENSE00001761869
chr17:
61559827-61560050
224
ACE_HUMAN
373-448
76
0
-
-
1.9
ENST00000290866
9
ENSE00001684602
chr17:
61560390-61560534
145
ACE_HUMAN
448-496
49
0
-
-
1.10
ENST00000290866
10
ENSE00001799028
chr17:
61560821-61560919
99
ACE_HUMAN
496-529
34
0
-
-
1.11
ENST00000290866
11
ENSE00001715718
chr17:
61561210-61561332
123
ACE_HUMAN
529-570
42
0
-
-
1.12
ENST00000290866
12
ENSE00001741036
chr17:
61561691-61561902
212
ACE_HUMAN
570-641
72
0
-
-
1.14
ENST00000290866
14
ENSE00001680947
chr17:
61562597-61562733
137
ACE_HUMAN
641-686
46
1
A:40-81
42
1.15
ENST00000290866
15
ENSE00001763320
chr17:
61563918-61564076
159
ACE_HUMAN
687-739
53
1
A:82-134
53
1.16
ENST00000290866
16
ENSE00001046871
chr17:
61564347-61564434
88
ACE_HUMAN
740-769
30
1
A:135-164
30
1.17
ENST00000290866
17
ENSE00001046888
chr17:
61566009-61566152
144
ACE_HUMAN
769-817
49
1
A:164-212
49
1.18
ENST00000290866
18
ENSE00001046881
chr17:
61566302-61566493
192
ACE_HUMAN
817-881
65
1
A:212-276
65
1.19
ENST00000290866
19
ENSE00001046911
chr17:
61568315-61568412
98
ACE_HUMAN
881-913
33
1
A:276-308
33
1.20
ENST00000290866
20
ENSE00001180835
chr17:
61568570-61568742
173
ACE_HUMAN
914-971
58
1
A:309-366
58
1.21
ENST00000290866
21
ENSE00001180829
chr17:
61570797-61571020
224
ACE_HUMAN
971-1046
76
1
A:366-441 (gaps)
76
1.22
ENST00000290866
22
ENSE00001046826
chr17:
61571283-61571427
145
ACE_HUMAN
1046-1094
49
1
A:441-489
49
1.23
ENST00000290866
23
ENSE00001046886
chr17:
61571733-61571831
99
ACE_HUMAN
1094-1127
34
1
A:489-522
34
1.24b
ENST00000290866
24b
ENSE00001180817
chr17:
61573755-61573877
123
ACE_HUMAN
1127-1168
42
1
A:522-563
42
1.25
ENST00000290866
25
ENSE00001180815
chr17:
61574159-61574346
188
ACE_HUMAN
1168-1231
64
1
A:563-623
61
1.26b
ENST00000290866
26b
ENSE00001944704
chr17:
61574498-61574804
307
ACE_HUMAN
1231-1306
76
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2oc2a_ (A:)
View:
Select:
Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Zincin-like
(701)
Superfamily
:
Metalloproteases (zincins), catalytic domain
(647)
Family
:
Neurolysin-like
(55)
Protein domain
:
Angiotensin converting enzyme, ACE
(14)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2oc2a_
A:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
Select:
Label:
Sorry, no Info available
[
close CATH info
]
Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_M2_2oc2A01 (A:40-623)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Peptidase_MA
(251)
Family
:
Peptidase_M2
(20)
Homo sapiens (Human)
(10)
1a
Peptidase_M2-2oc2A01
A:40-623
[
close Pfam info
]
Atom Selection
(currently selected atoms:
all
)
Protein
Nucleic
Backbone
Sidechain
Hetero
Ligand
Solvent
All Atoms
Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
Rendering
(selected part)
Molecule Coloring
(selected part)
by Chain (Asym. Unit)
by Chain (Biol. Unit)
by Secondary Structure
by Atom (CPK)
by SCOP Domain
by CATH Domain
by Pfam Domain
by Asymmetric Unit
by Exon
by Amino Acid
by Nucleotide
by Temperature
by Charge
by Rainbow (Group)
by Custom Color
Background Coloring
Choose
molecule
background
color...
[
close
]
RGB value
(e.g.: "#3cb371" or "60,179,113")
Stereo
Graphics Window
x
pixel
Miscellaneous
Script
Example Commands
Example Command
Action
select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
select protein & not helix & not sheet
select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
show bonds with a radius of 100 units (=0.4Å)
[
close Script example commands
]
Log
Note:
In this "Basic Interface" any change in the selection of a pulldown menu automatically triggers an action (one-step mechanism).
View and selection are coupled in the structure specific controls (e.g. "Hetero","PROSITE") .
Note:
In this "Advanced Interface" any change in the selection of a pulldown menu only sets the target for the corresponding control buttons (two-step mechanism).
View and selection are set independently in the structure specific controls (e.g. "Hetero","PROSITE") .
QuickSearch:
by PDB,NDB,UniProt,PROSITE Code or
Search Term(s)
Show PDB file:
Asym.Unit (104 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Plain Text
HTML (compressed size)
use JSmol [Javascript]
use Jmol [Java applet]
Upload:
Select a local file
OR
Enter a remote file address
You can upload any molecular structure file format that is recognized by Jmol,
e.g.: PDB, mmCif, CIF, CML, MOL, XYZ
(also compressed with 'gzip', see the
Jmol documentation
for a complete list)
JenaLib Atlas Page
|
Sequence/Alignment View
2OC2
Jmol Script Commands
|
Jmol Color Schemes
|
Jmol Mouse Manual
|
Jmol Wiki
controls:
collapse
expand
Home
JenaLib
Jmol Scripting
Contact
Help
