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2OBC
Asym. Unit
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Asym.Unit (121 KB)
Biol.Unit 1 (112 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF RIBD FROM ESCHERICHIA COLI IN COMPLEX WITH A SUBSTRATE ANALOGUE, RIBOSE 5-PHOSPHATE (BETA FORM), BOUND TO THE ACTIVE SITE OF THE REDUCTASE DOMAIN
Authors
:
M. Moche, P. Stenmark, D. Gurmu, P. Nordlund, Structural Proteomics (Spine)
Date
:
18 Dec 06 (Deposition) - 13 Feb 07 (Release) - 03 Jun 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.00
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Alpha And Beta Class Of Proteins With Mainly Parallell Strands, Substrate Analogue Complex (Ribose 5-Phosphate, Beta-Form), Structural Genomics, Htp Escherichia Coli Proteins, Structural Proteomics In Europe, Spine, Hydrolase, Oxidoreductase
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Reference
:
P. Stenmark, M. Moche, D. Gurmu, P. Nordlund
The Crystal Structure Of The Bifunctional Deaminase/Reductase Ribd Of The Riboflavin Biosynthetic Pathway In Escherichia Coli: Implications For The Reductive Mechanism.
J. Mol. Biol. V. 373 48 2007
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Hetero Components
(2, 19)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1b: SELENOMETHIONINE (MSEb)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
2a: 5-O-PHOSPHONO-BETA-D-RIBOFURANOSE (RP5a)
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No.
Name
Count
Type
Full Name
1
MSE
18
Mod. Amino Acid
SELENOMETHIONINE
2
RP5
1
Ligand/Ion
5-O-PHOSPHONO-BETA-D-RIBOFURANOSE
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Sites
(1, 1)
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All Sites
1: AC1 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU A:167 , SER A:168 , TRP A:170 , ARG A:184 , THR A:196 , ASP A:200 , PRO A:202 , ALA A:203 , LEU A:204 , THR A:205 , ARG A:207 , GLU A:299
BINDING SITE FOR RESIDUE RP5 A 401
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SAPs(SNPs)/Variants
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PROSITE Patterns/Profiles
(2, 4)
Info
All PROSITE Patterns/Profiles
1: CYT_DCMP_DEAMINASES_2 (A:2-123,B:2-123)
2: CYT_DCMP_DEAMINASES_1 (A:50-88,B:50-88)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
CYT_DCMP_DEAMINASES_2
PS51747
Cytidine and deoxycytidylate deaminases domain profile.
RIBD_ECOLI
1-123
2
A:2-123
B:2-123
2
CYT_DCMP_DEAMINASES_1
PS00903
Cytidine and deoxycytidylate deaminases zinc-binding region signature.
RIBD_ECOLI
50-88
2
A:50-88
B:50-88
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Exons
(0, 0)
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SCOP Domains
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_dCMP_cyt_deam_1_2obcB01 (B:2-100)
1b: PFAM_dCMP_cyt_deam_1_2obcB02 (B:2-100)
2a: PFAM_RibD_C_2obcB03 (B:147-362)
2b: PFAM_RibD_C_2obcB04 (B:147-362)
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Clan
:
CDA
(39)
Family
:
dCMP_cyt_deam_1
(28)
Escherichia coli (strain K12)
(3)
1a
dCMP_cyt_deam_1-2obcB01
B:2-100
1b
dCMP_cyt_deam_1-2obcB02
B:2-100
Clan
:
DHFred
(95)
Family
:
RibD_C
(6)
Escherichia coli (strain K12)
(2)
2a
RibD_C-2obcB03
B:147-362
2b
RibD_C-2obcB04
B:147-362
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