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2OAN
Asym. Unit
Info
Asym.Unit (495 KB)
Biol.Unit 1 (242 KB)
Biol.Unit 2 (238 KB)
Biol.Unit 3 (239 KB)
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(1)
Title
:
STRUCTURE OF OXIDIZED BETA-ACTIN
Authors
:
F. Schmitzberger, I. Lassing, P. Nordlund, U. Lindberg
Date
:
16 Dec 06 (Deposition) - 01 May 07 (Release) - 12 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.61
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: B,D (1x)
Biol. Unit 2: C (2x)
Biol. Unit 3: A (2x)
Keywords
:
Disulfide, Cysteine Covalently Modified By Oxidation, Structural Protein
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
I. Lassing, F. Schmitzberger, M. Bjornstedt, A. Holmgren, P. Nordlund, C. E. Schutt, U. Lindberg
Molecular And Structural Basis For Redox Regulation Of Beta-Actin.
J. Mol. Biol. V. 370 331 2007
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Hetero Components
(4, 17)
Info
All Hetero Components
1a: ADENOSINE-5'-TRIPHOSPHATE (ATPa)
1b: ADENOSINE-5'-TRIPHOSPHATE (ATPb)
1c: ADENOSINE-5'-TRIPHOSPHATE (ATPc)
1d: ADENOSINE-5'-TRIPHOSPHATE (ATPd)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
2c: CALCIUM ION (CAc)
2d: CALCIUM ION (CAd)
3a: 3-SULFINOALANINE (CSDa)
3b: 3-SULFINOALANINE (CSDb)
3c: 3-SULFINOALANINE (CSDc)
3d: 3-SULFINOALANINE (CSDd)
4a: SULFATE ION (SO4a)
4b: SULFATE ION (SO4b)
4c: SULFATE ION (SO4c)
4d: SULFATE ION (SO4d)
4e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ATP
4
Ligand/Ion
ADENOSINE-5'-TRIPHOSPHATE
2
CA
4
Ligand/Ion
CALCIUM ION
3
CSD
4
Mod. Amino Acid
3-SULFINOALANINE
4
SO4
5
Ligand/Ion
SULFATE ION
[
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Sites
(13, 13)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS A:50 , HIS A:87 , HIS A:88 , ASN A:92
BINDING SITE FOR RESIDUE SO4 A 701
02
AC2
SOFTWARE
ATP A:501 , HOH A:801 , HOH A:802 , HOH A:803 , HOH A:804
BINDING SITE FOR RESIDUE CA A 601
03
AC3
SOFTWARE
GLY A:13 , SER A:14 , GLY A:15 , MET A:16 , LYS A:18 , GLY A:156 , ASP A:157 , GLY A:158 , VAL A:159 , GLY A:182 , ARG A:210 , LYS A:213 , GLU A:214 , GLY A:301 , GLY A:302 , THR A:303 , MET A:305 , TYR A:306 , LYS A:336 , CA A:601 , HOH A:803 , HOH A:804 , HOH A:890 , HOH A:900
BINDING SITE FOR RESIDUE ATP A 501
04
AC4
SOFTWARE
LYS B:50 , SER B:52 , HIS B:87 , HIS B:88 , ASN B:92
BINDING SITE FOR RESIDUE SO4 B 701
05
AC5
SOFTWARE
ATP B:501 , HOH B:801 , HOH B:802 , HOH B:803 , HOH B:804
BINDING SITE FOR RESIDUE CA B 601
06
AC6
SOFTWARE
GLY B:13 , SER B:14 , GLY B:15 , MET B:16 , LYS B:18 , GLY B:156 , ASP B:157 , GLY B:158 , VAL B:159 , GLY B:182 , ARG B:210 , LYS B:213 , GLU B:214 , GLY B:301 , GLY B:302 , THR B:303 , MET B:305 , TYR B:306 , CA B:601 , HOH B:801 , HOH B:802 , HOH B:831 , HOH B:842
BINDING SITE FOR RESIDUE ATP B 501
07
AC7
SOFTWARE
ATP C:501
BINDING SITE FOR RESIDUE CA C 601
08
AC8
SOFTWARE
LYS C:50 , HIS C:87 , HIS C:88 , ASN C:92
BINDING SITE FOR RESIDUE SO4 C 701
09
AC9
SOFTWARE
GLY C:13 , SER C:14 , GLY C:15 , MET C:16 , LYS C:18 , GLY C:156 , ASP C:157 , GLY C:158 , VAL C:159 , GLY C:182 , ARG C:210 , LYS C:213 , GLU C:214 , GLY C:301 , GLY C:302 , THR C:303 , MET C:305 , TYR C:306 , CA C:601 , HOH C:707
BINDING SITE FOR RESIDUE ATP C 501
10
BC1
SOFTWARE
ATP D:501
BINDING SITE FOR RESIDUE CA D 601
11
BC2
SOFTWARE
LYS D:50 , HIS D:87 , HIS D:88 , ASN D:92 , HOH D:795 , HOH D:827
BINDING SITE FOR RESIDUE SO4 D 701
12
BC3
SOFTWARE
GLY D:308 , ILE D:309 , ALA D:310 , ASP D:311
BINDING SITE FOR RESIDUE SO4 D 702
13
BC4
SOFTWARE
GLY D:13 , SER D:14 , GLY D:15 , MET D:16 , LYS D:18 , GLY D:156 , ASP D:157 , GLY D:158 , VAL D:159 , GLY D:182 , ARG D:210 , LYS D:213 , GLU D:214 , GLY D:301 , GLY D:302 , THR D:303 , MET D:305 , TYR D:306 , CA D:601 , HOH D:748 , HOH D:755
BINDING SITE FOR RESIDUE ATP D 501
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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PROSITE Patterns/Profiles
(3, 12)
Info
All PROSITE Patterns/Profiles
1: ACTINS_1 (A:53-63,B:53-63,C:53-63,D:53-63)
2: ACTINS_ACT_LIKE (A:104-116,B:104-116,C:104-116,D:10...)
3: ACTINS_2 (A:356-364,B:356-364,C:356-364,D:35...)
;
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PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ACTINS_1
PS00406
Actins signature 1.
ACTB_BOVIN
53-63
4
A:53-63
B:53-63
C:53-63
D:53-63
2
ACTINS_ACT_LIKE
PS01132
Actins and actin-related proteins signature.
ACTB_BOVIN
104-116
4
A:104-116
B:104-116
C:104-116
D:104-116
3
ACTINS_2
PS00432
Actins signature 2.
ACTB_BOVIN
356-364
4
A:356-364
B:356-364
C:356-364
D:356-364
[
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Exons
(0, 0)
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All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d2oana2 (A:147-371)
1b: SCOP_d2oanb2 (B:147-374)
1c: SCOP_d2oanc2 (C:147-371)
1d: SCOP_d2oand2 (D:147-375)
2a: SCOP_d2oana1 (A:6-146)
2b: SCOP_d2oanb1 (B:4-146)
2c: SCOP_d2oanc1 (C:4-146)
2d: SCOP_d2oand1 (D:6-146)
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Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Ribonuclease H-like motif
(1424)
Superfamily
:
Actin-like ATPase domain
(426)
Family
:
Actin/HSP70
(199)
Protein domain
:
automated matches
(47)
Cow (Bos taurus) [TaxId: 9913]
(3)
1a
d2oana2
A:147-371
1b
d2oanb2
B:147-374
1c
d2oanc2
C:147-371
1d
d2oand2
D:147-375
Family
:
automated matches
(111)
Protein domain
:
automated matches
(111)
Cow (Bos taurus) [TaxId: 9913]
(3)
2a
d2oana1
A:6-146
2b
d2oanb1
B:4-146
2c
d2oanc1
C:4-146
2d
d2oand1
D:6-146
[
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2oanA01 (A:6-137,A:339-371)
1b: CATH_2oanC01 (C:4-137,C:339-371)
1c: CATH_2oanD01 (D:6-137,D:339-375)
1d: CATH_2oanB01 (B:4-137,B:339-374)
1e: CATH_2oanA02 (A:138-179,A:273-338)
1f: CATH_2oanB02 (B:138-179,B:273-338)
1g: CATH_2oanC02 (C:138-179,C:273-338)
1h: CATH_2oanD02 (D:138-179,D:273-338)
2a: CATH_2oanA03 (A:180-271)
2b: CATH_2oanB03 (B:180-271)
2c: CATH_2oanC03 (C:180-271)
2d: CATH_2oanD03 (D:180-271)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Nucleotidyltransferase; domain 5
(788)
Homologous Superfamily
:
[code=3.30.420.40, no name defined]
(217)
Cattle (Bos taurus)
(47)
1a
2oanA01
A:6-137,A:339-371
1b
2oanC01
C:4-137,C:339-371
1c
2oanD01
D:6-137,D:339-375
1d
2oanB01
B:4-137,B:339-374
1e
2oanA02
A:138-179,A:273-338
1f
2oanB02
B:138-179,B:273-338
1g
2oanC02
C:138-179,C:273-338
1h
2oanD02
D:138-179,D:273-338
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
Actin; Chain A, domain 4
(156)
Homologous Superfamily
:
Actin; Chain A, domain 4
(155)
Cattle (Bos taurus)
(47)
2a
2oanA03
A:180-271
2b
2oanB03
B:180-271
2c
2oanC03
C:180-271
2d
2oanD03
D:180-271
[
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Pfam Domains
(1, 4)
Info
all PFAM domains
1a: PFAM_Actin_2oanD01 (D:6-375)
1b: PFAM_Actin_2oanD02 (D:6-375)
1c: PFAM_Actin_2oanD03 (D:6-375)
1d: PFAM_Actin_2oanD04 (D:6-375)
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Clan
:
Actin_ATPase
(173)
Family
:
Actin
(70)
Bos taurus (Bovine)
(11)
1a
Actin-2oanD01
D:6-375
1b
Actin-2oanD02
D:6-375
1c
Actin-2oanD03
D:6-375
1d
Actin-2oanD04
D:6-375
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Asym.Unit (495 KB)
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Header - Biol.Unit 1
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