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2O9S
Asym. Unit
Info
Asym.Unit (35 KB)
Biol.Unit 1 (32 KB)
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(1)
Title
:
THE SECOND SH3 DOMAIN FROM PONSIN
Authors
:
N. Pinotsis, M. Wilmanns
Date
:
14 Dec 06 (Deposition) - 30 Oct 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
0.83
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Sh3 Domain, Ponsin, Signaling Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Gehmlich, N. Pinotsis, K. Hayess, P. F. Van Der Ven, H. Milting, A. El Banayosy, M. Wilmanns, E. Ehler
Paxillin And Ponsin Interact In Nascent Costameres Of Muscle Cells
J. Mol. Biol. V. 369 665 2007
(for further references see the
PDB file header
)
[
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]
Hetero Components
(3, 4)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
2a: SODIUM ION (NAa)
3a: THIOCYANATE ION (SCNa)
3b: THIOCYANATE ION (SCNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
1
Ligand/Ion
CHLORIDE ION
2
NA
1
Ligand/Ion
SODIUM ION
3
SCN
2
Ligand/Ion
THIOCYANATE ION
[
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]
Sites
(4, 4)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
PHE A:832 , ASN A:833 , ASP A:835 , HOH A:3611 , HOH A:3617 , HOH A:3682 , HOH A:3690 , HOH A:3698
BINDING SITE FOR RESIDUE NA A 2001
2
AC2
SOFTWARE
THR A:836 , GLU A:839 , HOH A:3736
BINDING SITE FOR RESIDUE CL A 2002
3
AC3
SOFTWARE
ASN A:833 , ARG A:852 , THR A:866 , SER A:867 , HOH A:3682 , HOH A:3697
BINDING SITE FOR RESIDUE SCN A 3601
4
AC4
SOFTWARE
ASN A:831 , ARG A:868 , GLN A:869 , HOH A:3620 , HOH A:3625 , HOH A:3648 , HOH A:3677 , HOH A:3678 , HOH A:3685
BINDING SITE FOR RESIDUE SCN A 3602
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
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]
PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: SH3 (-|A:824-882|-)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
SH3
PS50002
Src homology 3 (SH3) domain profile.
SRBS1_HUMAN
793-852
867-928
1231-1292
1
-
A:824-882
-
[
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]
Exons
(3, 3)
Info
All Exons
Exon 1.34 (A:818-821)
Exon 1.35 (A:822-844 (gaps))
Exon 1.36a (A:845-884)
View:
Select:
Label:
All Exon Boundaries
1: Boundary 1.33/1.34
2: Boundary 1.34/1.35
3: Boundary 1.35/1.36a
4: Boundary 1.36a/1.37a
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000371247
1b
ENSE00001402421
chr10:
97321135-97321077
59
SRBS1_HUMAN
-
0
0
-
-
1.3a
ENST00000371247
3a
ENSE00001802906
chr10:
97250877-97250792
86
SRBS1_HUMAN
-
0
0
-
-
1.5a
ENST00000371247
5a
ENSE00002181580
chr10:
97200937-97200883
55
SRBS1_HUMAN
1-4
4
0
-
-
1.6
ENST00000371247
6
ENSE00001198082
chr10:
97197312-97197247
66
SRBS1_HUMAN
4-26
23
0
-
-
1.7
ENST00000371247
7
ENSE00000810934
chr10:
97194474-97194379
96
SRBS1_HUMAN
26-58
33
0
-
-
1.8
ENST00000371247
8
ENSE00001122732
chr10:
97192333-97192205
129
SRBS1_HUMAN
58-101
44
0
-
-
1.9
ENST00000371247
9
ENSE00001122727
chr10:
97181973-97181947
27
SRBS1_HUMAN
101-110
10
0
-
-
1.10a
ENST00000371247
10a
ENSE00001122718
chr10:
97181830-97181718
113
SRBS1_HUMAN
110-147
38
0
-
-
1.13b
ENST00000371247
13b
ENSE00001352339
chr10:
97174619-97174251
369
SRBS1_HUMAN
148-270
123
0
-
-
1.15
ENST00000371247
15
ENSE00000810940
chr10:
97170534-97170390
145
SRBS1_HUMAN
271-319
49
0
-
-
1.16
ENST00000371247
16
ENSE00001021690
chr10:
97165904-97165875
30
SRBS1_HUMAN
319-329
11
0
-
-
1.17
ENST00000371247
17
ENSE00001021693
chr10:
97158946-97158774
173
SRBS1_HUMAN
329-386
58
0
-
-
1.18
ENST00000371247
18
ENSE00000810948
chr10:
97157040-97156977
64
SRBS1_HUMAN
387-408
22
0
-
-
1.19
ENST00000371247
19
ENSE00000716757
chr10:
97154832-97154758
75
SRBS1_HUMAN
408-433
26
0
-
-
1.20
ENST00000371247
20
ENSE00000987298
chr10:
97154430-97154368
63
SRBS1_HUMAN
433-454
22
0
-
-
1.23
ENST00000371247
23
ENSE00000810949
chr10:
97144042-97143995
48
SRBS1_HUMAN
454-470
17
0
-
-
1.24b
ENST00000371247
24b
ENSE00000810954
chr10:
97143871-97143742
130
SRBS1_HUMAN
470-513
44
0
-
-
1.25b
ENST00000371247
25b
ENSE00000987285
chr10:
97141556-97141442
115
SRBS1_HUMAN
513-551
39
0
-
-
1.26
ENST00000371247
26
ENSE00000987299
chr10:
97135813-97135730
84
SRBS1_HUMAN
552-579
28
0
-
-
1.27
ENST00000371247
27
ENSE00000987300
chr10:
97131806-97131741
66
SRBS1_HUMAN
580-601
22
0
-
-
1.28
ENST00000371247
28
ENSE00000987301
chr10:
97131184-97131083
102
SRBS1_HUMAN
602-635
34
0
-
-
1.29
ENST00000371247
29
ENSE00000987286
chr10:
97127456-97127407
50
SRBS1_HUMAN
636-652
17
0
-
-
1.30
ENST00000371247
30
ENSE00000987287
chr10:
97117560-97117388
173
SRBS1_HUMAN
652-710
59
0
-
-
1.31
ENST00000371247
31
ENSE00001214532
chr10:
97114724-97114639
86
SRBS1_HUMAN
710-738
29
0
-
-
1.32
ENST00000371247
32
ENSE00000987296
chr10:
97111133-97110966
168
SRBS1_HUMAN
739-794
56
0
-
-
1.33
ENST00000371247
33
ENSE00000987289
chr10:
97106209-97106163
47
SRBS1_HUMAN
795-810
16
0
-
-
1.34
ENST00000371247
34
ENSE00000987290
chr10:
97101435-97101321
115
SRBS1_HUMAN
810-848
39
1
A:818-821
4
1.35
ENST00000371247
35
ENSE00000987291
chr10:
97101167-97101042
126
SRBS1_HUMAN
849-890
42
1
A:822-844 (gaps)
30
1.36a
ENST00000371247
36a
ENSE00000987292
chr10:
97099084-97098890
195
SRBS1_HUMAN
891-955
65
1
A:845-884
40
1.37a
ENST00000371247
37a
ENSE00001214682
chr10:
97097051-97096278
774
SRBS1_HUMAN
956-1213
258
0
-
-
1.39
ENST00000371247
39
ENSE00000987293
chr10:
97081778-97081720
59
SRBS1_HUMAN
1214-1233
20
0
-
-
1.40
ENST00000371247
40
ENSE00000987294
chr10:
97078189-97078077
113
SRBS1_HUMAN
1233-1271
39
0
-
-
1.41c
ENST00000371247
41c
ENSE00001383385
chr10:
97074883-97071531
3353
SRBS1_HUMAN
1271-1292
22
0
-
-
[
close EXON info
]
SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d2o9sa_ (A:)
View:
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Classes
(
)
(
)
Folds
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(
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Superfamilies
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(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
SH3-like barrel
(1035)
Superfamily
:
SH3-domain
(369)
Family
:
automated matches
(114)
Protein domain
:
automated matches
(114)
Human (Homo sapiens) [TaxId: 9606]
(74)
1a
d2o9sa_
A:
[
close SCOP info
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_2o9sA00 (A:818-884)
View:
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Classes
(
)
(
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Architectures
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(
)
Topologies
(
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(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
2o9sA00
A:818-884
[
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_SH3_1_2o9sA01 (A:827-874)
View:
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Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-2o9sA01
A:827-874
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(currently selected atoms:
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Protein & NOT Site
Protein & NOT PROSITE
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Asymmetric Unit 1
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