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2O93
Asym. Unit
Info
Asym.Unit (166 KB)
Biol.Unit 1 (160 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF NFAT BOUND TO THE HIV-1 LTR TANDEM KAPPAB ENHANCER ELEMENT
Authors
:
D. L. Bates, L. Chen
Date
:
13 Dec 06 (Deposition) - 19 Jun 07 (Release) - 22 Jul 08 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
3.05
Chains
:
Asym. Unit : A,B,L,M,O
Biol. Unit 1: A,B,L,M,O (1x)
Keywords
:
Ig Domain; Protein-Dna Complex; Double Helix, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. L. Bates, K. K. Barthel, Y. Wu, R. Kalhor, J. C. Stroud, M. J. Giffin, L. Chen
Crystal Structure Of Nfat Bound To The Hiv-1 Ltr Tandem Kappab Enhancer Element
Structure V. 16 684 2008
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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]
SAPs(SNPs)/Variants
(1, 3)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_051783 (H446R, chain L/M/O, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_051783
H
446
R
NFAC2_HUMAN
Polymorphism
12479626
L/M/O
H
446
R
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: REL_2 (L:392-574,O:392-574)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
REL_2
PS50254
NF-kappa-B/Rel/dorsal domain profile.
NFAC2_HUMAN
392-574
2
L:392-574
O:392-574
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Exons
(7, 21)
Info
All Exons
Exon 1.4 (L:392-444 | M:395-444 | O:392-444)
Exon 1.5 (L:445-512 | M:445-512 | O:445-512)
Exon 1.6 (L:512-570 | M:512-570 | O:512-570)
Exon 1.7 (L:570-617 | M:570-617 | O:570-617)
Exon 1.8 (L:617-635 | M:617-635 | O:617-635)
Exon 1.9 (L:636-678 | M:636-678 | O:636-678)
Exon 1.10 (L:678-678 | M:678-678 | O:678-678)
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All Exon Boundaries
1: Boundary 1.3/1.4
2: Boundary 1.4/1.5
3: Boundary 1.5/1.6
4: Boundary 1.6/1.7
5: Boundary 1.7/1.8
6: Boundary 1.8/1.9
7: Boundary 1.9/1.10
8: Boundary 1.10/1.12c
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2
ENST00000396009
2
ENSE00001455518
chr20:
50159258-50158909
350
NFAC2_HUMAN
1-44
44
0
-
-
1.3
ENST00000396009
3
ENSE00000662713
chr20:
50140649-50139620
1030
NFAC2_HUMAN
44-387
344
0
-
-
1.4
ENST00000396009
4
ENSE00000662712
chr20:
50133494-50133323
172
NFAC2_HUMAN
387-444
58
3
L:392-444
M:395-444
O:392-444
53
50
53
1.5
ENST00000396009
5
ENSE00000662711
chr20:
50092197-50091995
203
NFAC2_HUMAN
445-512
68
3
L:445-512
M:445-512
O:445-512
68
68
68
1.6
ENST00000396009
6
ENSE00000662710
chr20:
50090689-50090517
173
NFAC2_HUMAN
512-570
59
3
L:512-570
M:512-570
O:512-570
59
59
59
1.7
ENST00000396009
7
ENSE00000662709
chr20:
50071225-50071085
141
NFAC2_HUMAN
570-617
48
3
L:570-617
M:570-617
O:570-617
48
48
48
1.8
ENST00000396009
8
ENSE00000662708
chr20:
50052298-50052243
56
NFAC2_HUMAN
617-635
19
3
L:617-635
M:617-635
O:617-635
19
19
19
1.9
ENST00000396009
9
ENSE00000662707
chr20:
50051851-50051725
127
NFAC2_HUMAN
636-678
43
3
L:636-678
M:636-678
O:636-678
43
43
43
1.10
ENST00000396009
10
ENSE00001455516
chr20:
50049293-50048604
690
NFAC2_HUMAN
678-908
231
3
L:678-678
M:678-678
O:678-678
1
1
1
1.12c
ENST00000396009
12c
ENSE00001955202
chr20:
50007988-50003494
4495
NFAC2_HUMAN
908-925
18
0
-
-
[
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SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d2o93l2 (L:392-575)
1b: SCOP_d2o93m2 (M:395-575)
1c: SCOP_d2o93o2 (O:392-575)
2a: SCOP_d2o93l1 (L:576-678)
2b: SCOP_d2o93m1 (M:576-678)
2c: SCOP_d2o93o1 (O:576-678)
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)
(
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All beta proteins
(24004)
Fold
:
Common fold of diphtheria toxin/transcription factors/cytochrome f
(364)
Superfamily
:
p53-like transcription factors
(153)
Family
:
Rel/Dorsal transcription factors, DNA-binding domain
(34)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC), DNA-binding domain
(9)
Human (Homo sapiens) [TaxId: 9606]
(9)
1a
d2o93l2
L:392-575
1b
d2o93m2
M:395-575
1c
d2o93o2
O:392-575
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
E set domains
(509)
Family
:
NF-kappa-B/REL/DORSAL transcription factors, C-terminal domain
(56)
Protein domain
:
T-cell transcription factor NFAT1 (NFATC2)
(7)
Human (Homo sapiens) [TaxId: 9606]
(7)
2a
d2o93l1
L:576-678
2b
d2o93m1
M:576-678
2c
d2o93o1
O:576-678
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_2o93L01 (L:397-569)
1b: CATH_2o93M01 (M:397-569)
1c: CATH_2o93O01 (O:397-569)
2a: CATH_2o93L02 (L:570-676)
2b: CATH_2o93M02 (M:570-678)
2c: CATH_2o93O02 (O:570-678)
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Homologous Superfamilies
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
[code=2.60.40.340, no name defined]
(30)
[unclassified]
(23)
1a
2o93L01
L:397-569
1b
2o93M01
M:397-569
1c
2o93O01
O:397-569
Homologous Superfamily
:
Immunoglobulins
(2282)
[unclassified]
(54)
2a
2o93L02
L:570-676
2b
2o93M02
M:570-678
2c
2o93O02
O:570-678
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Pfam Domains
(2, 6)
Info
all PFAM domains
1a: PFAM_TIG_2o93O01 (O:582-675)
1b: PFAM_TIG_2o93O02 (O:582-675)
1c: PFAM_TIG_2o93O03 (O:582-675)
2a: PFAM_RHD_2o93O04 (O:410-570)
2b: PFAM_RHD_2o93O05 (O:410-570)
2c: PFAM_RHD_2o93O06 (O:410-570)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
E-set
(290)
Family
:
TIG
(28)
Homo sapiens (Human)
(12)
1a
TIG-2o93O01
O:582-675
1b
TIG-2o93O02
O:582-675
1c
TIG-2o93O03
O:582-675
Clan
:
P53-like
(54)
Family
:
RHD
(21)
Homo sapiens (Human)
(13)
2a
RHD-2o93O04
O:410-570
2b
RHD-2o93O05
O:410-570
2c
RHD-2o93O06
O:410-570
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