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2O88
Asym. Unit
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Asym.Unit (30 KB)
Biol.Unit 1 (13 KB)
Biol.Unit 2 (12 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE N114A MUTANT OF ABL-SH3 DOMAIN COMPLEXED WITH A DESIGNED HIGH-AFFINITY PEPTIDE LIGAND: IMPLICATIONS FOR SH3-LIGAND INTERACTIONS
Authors
:
A. Camara-Artigas
Date
:
12 Dec 06 (Deposition) - 01 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Sh3 Domain High Affinity Peptide Complex, Signaling Protein
(Keyword Search:
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Reference
:
A. Camara-Artigas, A. Palencia, J. C. Martinez, I. Luque, J. A. Gavira J. M. Garcia-Ruiz
Crystallization By Capillary Counter-Diffusion And Structur Determination Of The N114A Mutant Of The Sh3 Domain Of Abl Tyrosine Kinase Complexed With A High-Affinity Peptide Ligand.
Acta Crystallogr. , Sect. D V. 63 646 2007
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Hetero Components
(2, 4)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
View:
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No.
Name
Count
Type
Full Name
1
ACE
2
Mod. Amino Acid
ACETYL GROUP
2
SO4
2
Ligand/Ion
SULFATE ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:89 , ASN B:94 , HIS B:95 , HOH B:143 , ACE D:0 , ALA D:1
BINDING SITE FOR RESIDUE SO4 B 122
2
AC2
SOFTWARE
ASN A:94 , HIS A:95 , HOH A:133 , ARG B:89 , ACE C:0 , ALA C:1
BINDING SITE FOR RESIDUE SO4 A 122
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
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Exons
(2, 4)
Info
All Exons
Exon 1.3b (A:64-85 | B:64-85)
Exon 1.4b (A:85-121 | B:85-119)
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All Exon Boundaries
1: Boundary 1.2a/1.3b
2: Boundary 1.3b/1.4b
3: Boundary 1.4b/1.5
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000318560
2a
ENSE00001955789
chr9:
133710453-133710912
460
ABL1_HUMAN
1-27
27
0
-
-
1.3b
ENST00000318560
3b
ENSE00000984287
chr9:
133729451-133729624
174
ABL1_HUMAN
27-85
59
2
A:64-85
B:64-85
22
22
1.4b
ENST00000318560
4b
ENSE00000868149
chr9:
133730188-133730483
296
ABL1_HUMAN
85-183
99
2
A:85-121
B:85-119
37
35
1.5
ENST00000318560
5
ENSE00002065214
chr9:
133738150-133738422
273
ABL1_HUMAN
184-274
91
0
-
-
1.6
ENST00000318560
6
ENSE00001726283
chr9:
133747516-133747600
85
ABL1_HUMAN
275-303
29
0
-
-
1.7
ENST00000318560
7
ENSE00001700841
chr9:
133748247-133748424
178
ABL1_HUMAN
303-362
60
0
-
-
1.8
ENST00000318560
8
ENSE00001758713
chr9:
133750255-133750439
185
ABL1_HUMAN
362-424
63
0
-
-
1.9
ENST00000318560
9
ENSE00001741732
chr9:
133753802-133753954
153
ABL1_HUMAN
424-475
52
0
-
-
1.10
ENST00000318560
10
ENSE00001715343
chr9:
133755455-133755544
90
ABL1_HUMAN
475-505
31
0
-
-
1.11
ENST00000318560
11
ENSE00001781962
chr9:
133755887-133756051
165
ABL1_HUMAN
505-560
56
0
-
-
1.12b
ENST00000318560
12b
ENSE00001457584
chr9:
133759356-133763062
3707
ABL1_HUMAN
560-1130
571
0
-
-
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SCOP Domains
(0, 0)
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2o88A00 (A:64-121)
1b: CATH_2o88B00 (B:64-119)
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Organisms
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)
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)
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
SH3 type barrels.
(648)
Homologous Superfamily
:
SH3 Domains
(267)
Human (Homo sapiens)
(133)
1a
2o88A00
A:64-121
1b
2o88B00
B:64-119
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_SH3_1_2o88B01 (B:67-113)
1b: PFAM_SH3_1_2o88B02 (B:67-113)
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(
)
Clan
:
SH3
(175)
Family
:
SH3_1
(141)
Homo sapiens (Human)
(69)
1a
SH3_1-2o88B01
B:67-113
1b
SH3_1-2o88B02
B:67-113
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