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2O86
Asym. Unit
Info
Asym.Unit (114 KB)
Biol.Unit 1 (107 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF BUFFALO LACTOPEROXIDASE WITH NITRATE AND IODIDE AT 2.8 A RESOLUTION
Authors
:
I. A. Sheikh, N. Singh, A. K. Singh, S. Sharma, P. Kaur, T. P. Singh
Date
:
12 Dec 06 (Deposition) - 26 Dec 06 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Anions, Peroxidase, Heme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
I. A. Sheikh, N. Singh, A. K. Singh, S. Sharma, P. Kaur, T. P. Singh
Crystal Structure Of A Ternary Complex Of Buffalo Lactoperoxidase With Nitrate And Iodide At 2. 8 A Resolution
To Be Published
[
close entry info
]
Hetero Components
(7, 27)
Info
All Hetero Components
1a: CALCIUM ION (CAa)
2a: CARBONATE ION (CO3a)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
4a: IODIDE ION (IODa)
4b: IODIDE ION (IODb)
4c: IODIDE ION (IODc)
4d: IODIDE ION (IODd)
4e: IODIDE ION (IODe)
4f: IODIDE ION (IODf)
4g: IODIDE ION (IODg)
5a: ALPHA-D-MANNOSE (MANa)
5b: ALPHA-D-MANNOSE (MANb)
6a: N-ACETYL-D-GLUCOSAMINE (NAGa)
6b: N-ACETYL-D-GLUCOSAMINE (NAGb)
6c: N-ACETYL-D-GLUCOSAMINE (NAGc)
6d: N-ACETYL-D-GLUCOSAMINE (NAGd)
6e: N-ACETYL-D-GLUCOSAMINE (NAGe)
6f: N-ACETYL-D-GLUCOSAMINE (NAGf)
6g: N-ACETYL-D-GLUCOSAMINE (NAGg)
6h: N-ACETYL-D-GLUCOSAMINE (NAGh)
7a: NITRATE ION (NO3a)
7b: NITRATE ION (NO3b)
7c: NITRATE ION (NO3c)
7d: NITRATE ION (NO3d)
7e: NITRATE ION (NO3e)
7f: NITRATE ION (NO3f)
7g: NITRATE ION (NO3g)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CA
1
Ligand/Ion
CALCIUM ION
2
CO3
1
Ligand/Ion
CARBONATE ION
3
HEM
1
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
4
IOD
7
Ligand/Ion
IODIDE ION
5
MAN
2
Ligand/Ion
ALPHA-D-MANNOSE
6
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
7
NO3
7
Ligand/Ion
NITRATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:95 , ARG A:504 , NAG A:597 , HOH A:3159
BINDING SITE FOR RESIDUE NAG A 596
02
AC2
SOFTWARE
ARG A:504 , NAG A:596 , MAN A:598
BINDING SITE FOR RESIDUE NAG A 597
03
AC3
SOFTWARE
NAG A:597 , HOH A:3130 , HOH A:3151
BINDING SITE FOR RESIDUE MAN A 598
04
AC4
SOFTWARE
ASN A:205 , SER A:208 , VAL A:215 , GLN A:217 , NAG A:600
BINDING SITE FOR RESIDUE NAG A 599
05
AC5
SOFTWARE
GLN A:217 , NAG A:599
BINDING SITE FOR RESIDUE NAG A 600
06
AC6
SOFTWARE
ASN A:241 , ALA A:244 , TRP A:384 , LYS A:388 , NAG A:602 , HOH A:3215
BINDING SITE FOR RESIDUE NAG A 601
07
AC7
SOFTWARE
NAG A:601 , MAN A:603 , HOH A:3232
BINDING SITE FOR RESIDUE NAG A 602
08
AC8
SOFTWARE
NAG A:602
BINDING SITE FOR RESIDUE MAN A 603
09
AC9
SOFTWARE
ASN A:332 , NAG A:605 , HOH A:3206
BINDING SITE FOR RESIDUE NAG A 604
10
BC1
SOFTWARE
NAG A:604 , HOH A:3206
BINDING SITE FOR RESIDUE NAG A 605
11
BC2
SOFTWARE
ASP A:110 , THR A:184 , PHE A:186 , ASP A:188 , SER A:190
BINDING SITE FOR RESIDUE CA A 1001
12
BC3
SOFTWARE
ASN A:95 , ARG A:96 , ARG A:504 , ARG A:506
BINDING SITE FOR RESIDUE CO3 A 688
13
BC4
SOFTWARE
GLU A:218 , PHE A:229
BINDING SITE FOR RESIDUE IOD A 2001
14
BC5
SOFTWARE
HOH A:3009
BINDING SITE FOR RESIDUE IOD A 2002
15
BC6
SOFTWARE
PRO A:236 , PRO A:424
BINDING SITE FOR RESIDUE IOD A 2003
16
BC7
SOFTWARE
GLU A:363 , ARG A:397
BINDING SITE FOR RESIDUE IOD A 2004
17
BC8
SOFTWARE
TRP A:46 , VAL A:342
BINDING SITE FOR RESIDUE IOD A 2005
18
BC9
SOFTWARE
LYS A:462 , THR A:463
BINDING SITE FOR RESIDUE IOD A 2006
19
CC1
SOFTWARE
SER A:359 , PRO A:367 , LYS A:402
BINDING SITE FOR RESIDUE IOD A 2007
20
CC2
SOFTWARE
LEU A:86 , ASP A:87 , LYS A:411 , HOH A:3185
BINDING SITE FOR RESIDUE NO3 A 3001
21
CC3
SOFTWARE
ARG A:31 , TYR A:331 , HOH A:3097 , HOH A:3209
BINDING SITE FOR RESIDUE NO3 A 3002
22
CC4
SOFTWARE
SER A:198 , LEU A:199 , LYS A:474
BINDING SITE FOR RESIDUE NO3 A 3003
23
CC5
SOFTWARE
GLU A:77 , ASN A:80 , PRO A:145 , LYS A:146 , ASP A:148
BINDING SITE FOR RESIDUE NO3 A 3004
24
CC6
SOFTWARE
PRO A:197 , SER A:198 , GLN A:468 , THR A:469 , LYS A:474
BINDING SITE FOR RESIDUE NO3 A 3005
25
CC7
SOFTWARE
ILE A:306 , PHE A:309 , TRP A:529 , TRP A:530 , GLU A:531
BINDING SITE FOR RESIDUE NO3 A 3006
26
CC8
SOFTWARE
HIS A:377 , THR A:378 , HIS A:429 , HOH A:3012
BINDING SITE FOR RESIDUE NO3 A 3007
27
CC9
SOFTWARE
MET A:101 , GLY A:104 , GLN A:105 , ASP A:108 , ASP A:112 , PHE A:113 , ALA A:114 , GLU A:258 , THR A:344 , PHE A:347 , ARG A:348 , GLY A:350 , HIS A:351 , VAL A:354 , PHE A:380 , ILE A:436 , ARG A:440 , HOH A:3056
BINDING SITE FOR RESIDUE HEM A 3008
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PEROXIDASE_3 (A:12-594)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PEROXIDASE_3
PS50292
Animal heme peroxidase superfamily profile.
PERL_BUBBU
129-711
1
A:12-594
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Label:
Sorry, no Info available
[
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Pfam Domains
(0, 0)
Info
all PFAM domains
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Label:
Sorry, no Info available
[
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Protein
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Protein & NOT Variant
Protein & NOT Site
Protein & NOT PROSITE
Chain A
Asymmetric Unit 1
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select :A, :C
select chains 'A' and 'C'
select [ALA]:A
select all 'ALA' residues (Alanines) in chain 'A'
select 5-10
select residue range 5 to 10 in all chains
select 5-10:A
select residue range 5 to 10 in chain 'A'
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select non-helix/non-sheet protein parts
set fontsize 20
set label size to 20 (allowed range: 1-58)
ssbonds 100
show SS bonds with a radius of 100 units (=0.4Å)
wireframe 100
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Asym.Unit (114 KB)
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