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2O7E
Asym. Unit
Info
Asym.Unit (680 KB)
Biol.Unit 1 (337 KB)
Biol.Unit 2 (344 KB)
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(1)
Title
:
TYROSINE AMMONIA-LYASE FROM RHODOBACTER SPHAEROIDES (HIS89PHE VARIANT), BOUND TO 2-AMINOINDAN-2-PHOSPHONIC ACID
Authors
:
G. V. Louie, M. E. Bowman, M. C. Moffitt, T. J. Baiga, B. S. Moore, J. P. Noel
Date
:
11 Dec 06 (Deposition) - 16 Jan 07 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.75
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Methylidene Imidazolone Prosthetic Group, Lyase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. V. Louie, M. E. Bowman, M. C. Moffitt, T. J. Baiga, B. S. Moore, J. P. Noel
Structural Determinants And Modulation Of Substrate Specificity In Phenylalanine-Tyrosine Ammonia-Lyases.
Chem. Biol. V. 13 1327 2006
(for further references see the
PDB file header
)
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Hetero Components
(2, 16)
Info
All Hetero Components
1a: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOa)
1b: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOb)
1c: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOc)
1d: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOd)
1e: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOe)
1f: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOf)
1g: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOg)
1h: {2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4... (MDOh)
2a: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMIa)
2b: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMIb)
2c: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMIc)
2d: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMId)
2e: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMIe)
2f: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMIf)
2g: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMIg)
2h: (2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL... (PMIh)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MDO
8
Mod. Amino Acid
{2-[(1S)-1-AMINOETHYL]-5-HYDROXY-4-METHYL-1H-IMIDAZOL-1-YL}ACETIC ACID
2
PMI
8
Ligand/Ion
(2-AMINO-2,3-DIHYDRO-1H-INDEN-2-YL)PHOSPHONIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
8: AC8 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
TYR A:60 , MDO A:149 , ASN A:203 , ASN A:333 , PHE A:350 , HOH A:4925 , MET B:405 , GLN D:297 , TYR D:300 , ARG D:303
BINDING SITE FOR RESIDUE PMI A 701
2
AC2
SOFTWARE
MET A:405 , TYR B:60 , MDO B:149 , ASN B:203 , ASN B:333 , PHE B:350 , HOH B:4929 , GLN C:297 , TYR C:300 , ARG C:303
BINDING SITE FOR RESIDUE PMI B 701
3
AC3
SOFTWARE
GLN B:297 , TYR B:300 , ARG B:303 , TYR C:60 , MDO C:149 , LEU C:153 , ASN C:203 , ASN C:333 , PHE C:350 , HOH C:3002 , HOH C:4922 , MET D:405
BINDING SITE FOR RESIDUE PMI C 701
4
AC4
SOFTWARE
GLN A:297 , TYR A:300 , ARG A:303 , MET C:405 , TYR D:60 , MDO D:149 , ASN D:203 , ASN D:333 , PHE D:350 , HOH D:4926
BINDING SITE FOR RESIDUE PMI D 701
5
AC5
SOFTWARE
TYR E:60 , MDO E:149 , ASN E:203 , ASN E:333 , PHE E:350 , HOH E:4923 , MET F:405 , GLN H:297 , TYR H:300 , ARG H:303
BINDING SITE FOR RESIDUE PMI E 701
6
AC6
SOFTWARE
MET E:405 , TYR F:60 , MDO F:149 , ASN F:203 , ASN F:333 , PHE F:350 , HOH F:4924 , GLN G:297 , TYR G:300 , ARG G:303
BINDING SITE FOR RESIDUE PMI F 701
7
AC7
SOFTWARE
GLN F:297 , TYR F:300 , ARG F:303 , TYR G:60 , MDO G:149 , LEU G:153 , ASN G:203 , ASN G:333 , PHE G:350 , HOH G:4921 , MET H:405
BINDING SITE FOR RESIDUE PMI G 701
8
AC8
SOFTWARE
GLN E:297 , TYR E:300 , ARG E:303 , MET G:405 , TYR H:60 , MDO H:149 , ASN H:203 , ASN H:333 , PHE H:350 , HOH H:4930
BINDING SITE FOR RESIDUE PMI H 701
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: PAL_HISTIDASE (A:145-161,B:145-161,C:145-161,D:14...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAL_HISTIDASE
PS00488
Phenylalanine and histidine ammonia-lyases signature.
TALY_RHOS4
145-161
8
A:145-161
B:145-161
C:145-161
D:145-161
E:145-161
F:145-161
G:145-161
H:145-161
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_2o7eC01 (C:8-204)
1b: CATH_2o7eD01 (D:8-204)
1c: CATH_2o7eE01 (E:8-204)
1d: CATH_2o7eF01 (F:8-204)
1e: CATH_2o7eG01 (G:8-204)
1f: CATH_2o7eH01 (H:8-204)
1g: CATH_2o7eA01 (A:7-204)
1h: CATH_2o7eB01 (B:7-204)
2a: CATH_2o7eA02 (A:205-523)
2b: CATH_2o7eB02 (B:205-523)
2c: CATH_2o7eC02 (C:205-523)
2d: CATH_2o7eD02 (D:205-523)
2e: CATH_2o7eE02 (E:205-523)
2f: CATH_2o7eF02 (F:205-523)
2g: CATH_2o7eG02 (G:205-523)
2h: CATH_2o7eH02 (H:205-523)
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Organisms
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Fumarase C; Chain B, domain 1
(57)
Homologous Superfamily
:
Fumarase/aspartase (N-terminal domain)
(57)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(6)
1a
2o7eC01
C:8-204
1b
2o7eD01
D:8-204
1c
2o7eE01
E:8-204
1d
2o7eF01
F:8-204
1e
2o7eG01
G:8-204
1f
2o7eH01
H:8-204
1g
2o7eA01
A:7-204
1h
2o7eB01
B:7-204
Architecture
:
Up-down Bundle
(3216)
Topology
:
Fumarase C; Chain A, domain 2
(60)
Homologous Superfamily
:
Fumarase/aspartase (Central domain)
(59)
Rhodobacter sphaeroides. Organism_taxid: 1063.
(6)
2a
2o7eA02
A:205-523
2b
2o7eB02
B:205-523
2c
2o7eC02
C:205-523
2d
2o7eD02
D:205-523
2e
2o7eE02
E:205-523
2f
2o7eF02
F:205-523
2g
2o7eG02
G:205-523
2h
2o7eH02
H:205-523
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (680 KB)
Header - Asym.Unit
Biol.Unit 1 (337 KB)
Header - Biol.Unit 1
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